Sequence
atgc intronic sequence ATGC exonic sequence...actagaaatattcatgttgtgtgagtagaaggtgagatggcaaaaacattcttgttttctttcaatatctgaattctaattttctttttgacctcttaagCAGACTCCAAATCCAGCTTGGTGTGAATATGCCAGCAAGGGCAGAAAAGATTACAGGGATACAGGAAGTAGAGACACTTCACGAAACATACGATGTTGTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g04700.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA03G34340.1 (Glycine max), 3'ss of exon 7
actagaaatattcatgttgtgtgagtaga--aggtgagatggcaaaaacattcttgttttctttcaatatctgaattctaattttctttttgacctcttaagCAGACTCCAAATCCAGCTTGGTGTGAATATGCCAGCAAGGGCAGAAAAGATTACAGGGATACAGGAAGTAGA------GACACTTCACGAAACATACGATGTTGTT
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--cataatgattaaaattgttcctgtacaccatatgtattaattattgccacaatattgcagactaatatgtatatttt---tttctttccaatttgttgagcagACTCCAAATACAGCTTGGTGTGAACATGCCATCAAGGGCAGAACAGATTTCAGGAAAACAAAAACAAGAAAAGCAAATGTTTCATGAAGTGTACGATGTG---
upper sequence: Vv08s0007g04700.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G06800.1 (Glycine max), 3'ss of exon 8
actagaaatattcatgttgtgtgagtagaaggtgagatggcaaaaacattcttgttttctttcaatatctgaattctaattttctttttgacctcttaagCAGACTCCAAATCCAGCTTGGTGTGAATATGCCAGCAAGGGCAGAAAAGATTACAGGGATACAGGAAGTAGAGACACTTCACGAAACATACGATGTTGTT---
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-tcttatccctttcttttctcctaacagtctaggcatt--tcactttactatagtaaatattgtaggctgagggtttttcctactttgcaacttgttatgcagACTACAAATCCAGCTAGGTGTGAACATGCCAGCGAGGGCAGAACAGATTCCAGGAAAAGAGGAAATGCAAATGTTCCATGAGGCTTATGATGTCGTACTT
upper sequence: Vv08s0007g04700.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA13G20980.1 (Glycine max), 3'ss of exon 8
actagaaatattcatgttgtgtgagtagaaggtgagatggcaaaa-acattcttgttttctttcaatatctgaattctaattttctttttgacctcttaagCAGACTCCAAATCCAGCTTGGTGTGAATATGCCAGCAAGGGCAGAAAAGATTACAGGGATACAGGAAGTAGAGACACTTCACGAAACATACGATGTTGTT---
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---agatcttatccctttctttcccccctaacagtctaggcatttcactttactagaatattgtaggctgagggttttt-cctactttgcaacttgttatgcagACTACAAATCCAGCTAGGTGTGAACATGCCTGCTAGGGCAGAGCAGATTCCTGGAAAAGAGGAAGTTCAAATGTTCCATGAGGCTTACGATGTTGTACTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110375016|gb|EC939968.1|EC939968EST: TCTGCTGCTGGTGGTGAGGAAGTGGATCTCCTTCTTCCTGGAACAGC-A- -AGACTCCAAATCCAGCTTGGTGTGAATATGCCAGCAAGGGCAGAAAAGAT
genomic: TCTGCTGCTGGTGGTGAGGAAGTGGATCTCCTTCTTCCTGGAACAGCAAGgtttgatttc ... acctcttaagCAGACTCCAAATCCAGCTTGGTGTGAATATGCCAGCAAGGGCAGAAAAGAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acattcttgttttctttcaatatctgaattctaattttctttttgacctcttaagCAGACTCCAAATCCAGCTTGGTGTGAATATGCCAGCAAGGGCAGAAAAGATTACAGGGATACAGGAAGTAGAGACACTTCACGAAACATACGATGTTGTT
ttttctttttgacctc CT-rich tract
aattctaattttcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
actagaaatattcatgttgtgtgagtagaaggtgagatggcaaaaacattcttgttttctttcaatatctgaattctaattttctttttgacctcttaagCAGACTCCAAATCCAGCTTGGTGTGAATATGCCAGCAAGGGCAGAAAAGATTACAGGGATACAGGAAGTAGAGACACTTCACGAAACATACGATGTTGTT
- -agaaata
- - - - - - - - -tgtgtga
- - - - - - - - - - - - - - - - - - - -gcaaaaa