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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttatattacaccgagtcctcacatgccatccttctcatcatgtgaaaaattggtcttttcttatatgttttatgttgaattaccaacttcatctgcttgtacatttattagtgcattaggtgattaatataatttttgaacagGTATCATTGTCCGGAATACTCTTGTGATGTATGATCGTGAGCACTTGAAGATTGGTTTCTGGAAAACTAATTGTTCTGAGATATGGGAAATACTTCACCT

Basic information

species Vitis vinifera
transcript Vv07s0129g00600.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0129g00600.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G05490.1 (Glycine max), 3'ss of exon 7
--gtattttatattacaccgagtcctcacatgccatc-----cttctcatcatgtgaaaaattggtcttttcttatatgttttatgttgaattaccaacttcatctgcttgtacatt-tattagtgcattaggtgattaatataatttttgaacagGTATCATTGTCCGGAATACTCTTGTGATGTATGATCGTGAGCACTTGAAGATTGGTTTCTGGAAAACTAATTGTTCTGAGATATGGGAAATACTTCACCT
   ||| |||| |   |  | ||  |  ||||||||      |||    || | ||||| ||||     ||| | |||| ||| ||||  | |         ||  | |||| || |   ||||||       | || | | |  | ||||   ||| ||  |||| || || |||||||| ||||||||||||||||| |  || |||||||||||||||||||||||||||||| ||||||||| ||| ||  |
gtatatcttatttagtat-gggtaatttcatgccatttcatactttcactcttttgaaatattg-----ttcctctatgatttttgttagagt--------tatgggtttgtgcaatactttagtg------atcatcattcttttgtttgtgtagGCATTGTTGTTCGTAACACTCTTGTAATGTATGATCGTGAGCATTCAAAAATTGGTTTCTGGAAAACTAATTGTTCTGAGTTATGGGAAAGACTACATGT

upper sequence: Vv07s0129g00600.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA01G39800.1 (Glycine max), 3'ss of exon 10
--gtattttatattacaccgagtcctcacatgccatc-----cttctcatcatgtgaaaaattggtcttttcttatatgttttatgttgaattaccaacttcatctgcttgtacatttattagtgcattaggtgattaatataatttttgaacagGTATCATTGTCCGGAATACTCTTGTGATGTATGATCGTGAGCACTTGAAGATTGGTTTCTGGAAAACTAATTGTTCTGAGATATGGGAAATACTTCACCT
   ||  |||| |   |  | ||  |  ||||||||      |||| | | || ||||  ||||     ||| | |||| ||| ||||  | |         ||  | |||| ||        | | |||| |||| | | |  | ||||   ||||||  |||| || || |||||||| |||||||||||||||||    || |||||||||||||||||||||||||||||| ||||||||| ||| ||  |
gtatagcttatttagtatag-gttatttcatgccatttcgtacttccccttatttgaagtattg-----ttcctctatgatttttgttagagt--------tatgggtttgtgca-------atactttag-tgataattcttttgtttgtgtagGTATTGTTGTTCGTAACACTCTTGTAATGTATGATCGTGAGCATACAAAAATTGGTTTCTGGAAAACTAATTGTTCTGAGTTATGGGAAAGACTACATGT

upper sequence: Vv07s0129g00600.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA05G21800.1 (Glycine max), 3'ss of exon 7
gtattttatattacaccgagtcctca---catgccatccttctca--tcatgtgaaaaattggtcttttcttatatgttttatgttgaattaccaacttc------atctgcttgtacatttattagtgcattaggtgattaatataatt-tttgaacagGTATCATTGTCCGGAATACTCTTGTGATGTATGATCGTGAGCACTTGAAGATTGGTTTCTGGAAAACTAATTGTTCTGAGATATGGGAAATACTTCACCT
|||  |||| | |    | |  |||    |||  ||| |||   |  ||| |||||| |||  || | ||| ||    ||| | ||  ||  | | ||||      ||  | ||   || || || |   || |     ||   ||  || |||| | ||||||||||||||| || |||||||| |||||||||||||||||    || ||||||||||||||||| || ||| ||||| ||||||||| | | ||   
gtaacttatttgattttgggagctcgatccatttcatgctttgtacttcaagtgaaatattattcctctctaat----tttgtattacatggctagcttctgtggtataggtttcagcaattctttggtgatcattcccttgtcatttttgtttgcatagGTATCATTGTCCGAAACACTCTTGTAATGTATGATCGTGAGCAGACAAAAATTGGTTTCTGGAAAACAAACTGTGCTGAGTTATGGGAAAGATTGCAGAC

upper sequence: Vv07s0129g00600.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G17990.1 (Glycine max), 3'ss of exon 7
gtattttatattacaccgag---tcctcacatgccatccttctcatcatgtgaaaaattgg-----tcttttcttatatgttttatgttgaattaccaacttc------atctgcttgtaca-tttattagtgcattaggtgattaatataatt-tttgaacagGTATCATTGTCCGGAATACTCTTGTGATGTATGATCGTGAGCACTTGAAGATTGGTTTCTGGAAAACTAATTGTTCTGAGATATGGGAAATACTTCACCT
|||  |||| | |    | |   | |   |||  |||  ||         ||  ||||| |     |  || ||      |||| | ||  ||  | | ||||      ||  | ||   || ||  |||||| || |     ||   ||  || |||| | ||||||||||||||| || ||||||||  ||||||||||||||||    || ||||||||||||||||| || ||| ||||| ||||||||| | | ||  |
gtaacttatttgattttgggaacttcatccatttcatgttttgtgcttcatgtgaaattagaaatattattcctctctaattttgtattacatggctagcttctgtggtataggtttcagcaattctttagtg-atcattcccttgccatttttgtttgcatagGTATCATTGTCCGAAACACTCTTGTAGTGTATGATCGTGAGCAGACAAAAATTGGTTTCTGGAAAACAAACTGTGCTGAGTTATGGGAAAGATTACAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatctgcttgtacatttattagtgcattaggtgattaatataatttttgaacagGTATCATTGTCCGGAATACTCTTGTGATGTATGATCGTGAGCACTTGAAGATTGGTTTCTGGAAAACTAATTGTTCTGAGATATGGGAAATACTTCACCT
                                 gattaat  putative branch site (score: 3)
                                            ttttt  putative PPT
                          attaggtgattaatat  TA-rich tract