Sequence
atgc intronic sequence ATGC exonic sequence...tttaaggcagtgctggacgtctacatttgcacaagttcagttttctccatggttgattttgttggcttctaactgacagcattgattgggtgctttacagACATCACTTCATGGGAGCTGTCCGGTAATCAAAGGGGAGAAATGGGTGGCGACAAAGTGGATCAGGGATCAAGAACAAGATGACTAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0129g00460.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G348578_T01 (Zea mays), 3'ss of exon 7
-----tttaaggcagtgctggacgtctacatttgcacaagttcagttttctccatggttgattttgttggcttctaactgacagcattgattgggtgct-ttacagACATCACTTCATGGGAGCTGTCCGGTAATCAAAGGGGAGAAATGGGTGGCGACAAAGTGGATCAGGGATCA-AGAACAAGATGACTAA------------
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gaggtagtaaaaaaattctttgcgacgccatggaaatcaatttagagttaccaatggaagtcttgat--gctgctaacttgcat--ttg--cacatgctgtcgcagACTTCACTTCATGGTAGCTGCCCCGTCATCAAAGGCGAGAAATGGGTCGCCACCAAATGGATCAGAGACAATATAGTGTAGAAATCGAAAGGCTCAGGTG
upper sequence: Vv07s0129g00460.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA05G22270.2 (Glycine max), 3'ss of exon 7
------tttaaggcagtgctggacgtctacatttgc-acaagttcagttttctccatggttgattttgttggcttctaactgacagcattgattgggtgctttacagACATCACTTCATGGGAGCTGTCCGGTAATCAAAGGGGAGAAATGGGTGGCGACAAAGTGGATCAGGGATCAAGAACAAGATGACTAA-------------
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aaaccattttattttgtgtctattctttacttgggtgatagacttgtgttagtgcaaaccgaattctggttgttt--gactt---gtcttg--tgcatctttggcagACATCACTCCATGGGAGCTGCCCCGTGATAAAAGGGGAGAAGTGGGTGGCTACAAAGTGGATAAGAGATCAAGAACAGGATGATTAGATGATTGGCACCT
upper sequence: Vv07s0129g00460.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G17810.1 (Glycine max), 3'ss of exon 7
------tttaaggcagtgctggacgtctacatttgc-acaagttcagttttctccatggttgattttgttggcttctaactgacagcattgattgggtgctttacagACATCACTTCATGGGAGCTGTCCGGTAATCAAAGGGGAGAAATGGGTGGCGACAAAGTGGATCAGGGATCAAGAACAAGATGACTAA-------------
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aaccatttttactttgtgtctattctttacttgggtgatagacttgtgttagtgcaaaccagattctggttgttt--gacttgt--cctaggt---atctttggcagACATCACTCCATGGGAGCTGCCCCGTGATAAAAGGGGAGAAGTGGGTGGCTACAAAGTGGATAAGAGATCAAGAATTGGATGATTAGATAATTGGCACCT
upper sequence: Vv07s0129g00460.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA01G39900.1 (Glycine max), 3'ss of exon 7
-tttaaggcagtgctggacgtctacatttgcacaagttcagttttctccatggttgattttgttggcttctaactgac-agcattgattgggtgcttta-cagACATCACTTCATGGGAGCTGTCCGGTAATCAAAGGGGAGAAATGGGTGGCGACAAAGTGGATCAGGGATCAAGAACAAGATGACTAA
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attctgattattttttggc---taaattttaagacattctgaactggatgcgctcagctcaaccgctcattatttggccatctttctatgtgtactttggcagACATCAGTCCATGGAAGCTGCCCCGTCATAAAAGGAGAGAAGTGGGTGGCAACAAAGTGGATAAGGGATCAAGTGCTGGACGATTAG
upper sequence: Vv07s0129g00460.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: PP1S19_322V6.1 (Physcomitrella patens), 3'ss of exon 9
--------tttaaggcagtgctggacgtctacatttgcacaagttcagttttctccatggttgattttgttggcttctaact-gacagcattgattgggtgctttacagACATCACTTCATGGGAGCTGTCCGGTAATCAAAGGGGAGAAATGGGTGGCGACAAAGTGGATCAGGGATCAAGAACAA----GATGACTAA---------
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ttcgattgtttagaataaattccagc--taaaattttcccg----tagttatgcttgcaaatcatcatgacagattctcacttgattgca---actttctccgcaacagAGCGCTCTGCATGGAAGCTGCCCTGTAATCAAAGGCGAGAAATGGGTTGCCACAAAGTGGATTCGCAACACTGACAAATTTTGATCACCACCATGCGAAC
upper sequence: Vv07s0129g00460.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: EFJ15913 (Selaginella moellendorffii), 3'ss of exon 7
tttaaggcagtgctggacgtctacatttgcacaagttcagttttctccatggttgattttgttggcttctaactgacagcattgattgggtgctttacagACATCACTTCATGGGAGCTGTCCGGTAATCAAAGGGGAGAAATGGGTGGCGACAAAGTGGATCAGGGATCAAGAACAAGATGACTAA
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----------------------------------------gtcagtcgatcgaaaacgaagaaatcgcc--actgaca-tattg--tcgccgttgt-tagACTGCATTGCACGGGAGCTGTCCAGTGATTAAAGGCGAGAAATGGGTCGCCACAAAGTGGATCAGGGACAAAGAAGATTGGTCTTGA
upper sequence: Vv07s0129g00460.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: EFJ33274 (Selaginella moellendorffii), 3'ss of exon 6
tttaaggcagtgctggacgtctacatttgcacaagttcagttttctccatggttgattttgttggcttctaactgacagcattgattgggtgctttacagACATCACTTCATGGGAGCTGTCCGGTAATCAAAGGGGAGAAATGGGTGGCGACAAAGTGGATCAGGGATCAAGAACAAGATGACTAA
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----------------------------------------gtcagtcgatcgaaaacgaagaaatcgcc--actgata-tattg--tcgccgttgt-tagACTGCATTGCACGGGAGCTGTCCAGTGATTAAAGGCGAGAAATGGGTCGCCACGAAGTGGATCAGGGACAAAGAAGATTGGTCTTGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tccatggttgattttgttggcttctaactgacagcattgattgggtgctttacagACATCACTTCATGGGAGCTGTCCGGTAATCAAAGGGGAGAAATGGGTGGCGACAAAGTGGATCAGGGATCAAGAACAAGATGACTAA
ttgatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttaaggcagtgctggacgtctacatttgcacaagttcagttttctccatggttgattttgttggcttctaactgacagcattgattgggtgctttacagACATCACTTCATGGGAGCTGTCCGGTAATCAAAGGGGAGAAATGGGTGGCGACAAAGTGGATCAGGGATCAAGAACAAGATGACTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - -gtgctgg
- - - - - - - - - - - -catttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgattgg