1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gcaagatctcatactccttccattttcttcttctcttcactttctatcacattttttaacctttgtcaacattatgatcttttcatgtttcagGTATGTAATGAGTCCCCCTATTAGAGCATTGGGACATGACAAGGCCCTTCAAGCTGCTCTTTCAACTGGAAATCTGCAG
species | Vitis vinifera |
transcript | Vv06s0009g02790.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTCCTTGATGATTCTGGGCTCTGGGATCCTGACTTCATCAACGCAGCAAA GTATGTAATGAGTCCCCCTATTAGAGCATTGGGACATGACAAGGCCCTTCAEST: gi|30131395|gb|CB916734.1|CB916734
genomic: GTCCTTGATGATTCTGGGCTCTGGGATCCTGACTTCATCAACGCAGCAAAgcaagatctc ... catgtttcagGTATGTAATGAGTCCCCCTATTAGAGCATTGGGACATGACAAGGCCCTTCA
EST: GTCCTTGATGATTCTGGGCTCTGGGATCCTGACTTCATCAACGCAGCAAA GTATGTAATGAGTCCCCCTATTAGAGCATTGGGACATGACAAGGCCCTTCAEST: gi|30295952|gb|CB972746.1|CB972746
genomic: GTCCTTGATGATTCTGGGCTCTGGGATCCTGACTTCATCAACGCAGCAAAgcaagatctc ... catgtttcagGTATGTAATGAGTCCCCCTATTAGAGCATTGGGACATGACAAGGCCCTTCA
EST: GTCCTTGATGATTCTGGGCTCTGGGATCCTGACTTCATCAACGCAGCAAA GTATGTAATGAGTCCCCCTATTAGAGCATTGGGACATGACAAGGCCCTTCA
genomic: GTCCTTGATGATTCTGGGCTCTGGGATCCTGACTTCATCAACGCAGCAAAgcaagatctc ... catgtttcagGTATGTAATGAGTCCCCCTATTAGAGCATTGGGACATGACAAGGCCCTTCA
actttctatcacattttttaacctttgtcaacattatgatcttttcatgtttcagGTATGTAATGAGTCCCCCTATTAGAGCATTGGGACATGACAAGGCCCTTCAAGCTGCTCTTTCAACTGGAAATCTGCAG
ttttaac putative branch site (score: 2)
tcttttcatgtttc putative PPT
tatcacattttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagatctcatactccttccattttcttcttctcttcactttctatcacattttttaacctttgtcaacattatgatcttttcatgtttcagGTATGTAATGAGTCCCCCTATTAGAGCATTGGGACATGACAAGGCCCTTCAAGCTGCTCTTTCAACTGGAAATCTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG