1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tattttgttttggaaatttgataatttaatattttttttcttttaccaaatattaatgtgttataaagaatctgatgttatcatttcaattatcatgcagTGCAATCCTGTACTTATAGGAGTATCTTGCAGGGTGCTGAATGTTAGACCAGCTGCATTTTTCTTTATCAAATGCAATCTTCACTCTAAGGAAATTCAAC
species | Vitis vinifera |
transcript | Vv06s0004g03990.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCATTGTTCGTGAAGTAGTTGAAGAGATTGGAGTACCTGAGGTGTCCCTA TGCAATCCTGTACTTATAGGAGTATCTTGCAGGGTGCTGAATGTCAGACCAEST: gi|110367150|gb|EC931076.1|EC931076
genomic: GCATTGTTCGTGAAGTAGTTGAAGAGATTGGAGTACCTGAGGCGTCCCTAgtaagtttca ... tatcatgcagTGCAATCCTGTACTTATAGGAGTATCTTGCAGGGTGCTGAATGTTAGACCA
EST: GCATTGTTCGTGAAGTAGTTGAAGAGATTGGAGTACCTGAGGCGTCCCTA TGCAATCCTGTACTTATAGGAGTATCTTGCAGGGTGCTGAATGTTAGACCAEST: gi|83275389|gb|DV939397.1|DV939397
genomic: GCATTGTTCGTGAAGTAGTTGAAGAGATTGGAGTACCTGAGGCGTCCCTAgtaagtttca ... tatcatgcagTGCAATCCTGTACTTATAGGAGTATCTTGCAGGGTGCTGAATGTTAGACCA
EST: GCATTGTTCGTGAAGTAGTTGAAGAGATTGGAGTACCTGAGGCGTCCCTA TGCAATCCTGTACTTATAGGAGTATCTTGCAGGGTGCTGAATGTTAGACCAEST: gi|33408855|gb|CF214482.1|CF214482
genomic: GCATTGTTCGTGAAGTAGTTGAAGAGATTGGAGTACCTGAGGCGTCCCTAgtaagtttca ... tatcatgcagTGCAATCCTGTACTTATAGGAGTATCTTGCAGGGTGCTGAATGTTAGACCA
EST: GCATTGTTCGTGAAGTAGTTGAAGAGATTGGAGTACCTGAGGCGTCCCTA TGCAATCCTGTACTTATAGGAGTATCTCGCAGGGTGCTGAATGTTAGACCA
genomic: GCATTGTTCGTGAAGTAGTTGAAGAGATTGGAGTACCTGAGGCGTCCCTAgtaagtttca ... tatcatgcagTGCAATCCTGTACTTATAGGAGTATCTTGCAGGGTGCTGAATGTTAGACCA
ccaaatattaatgtgttataaagaatctgatgttatcatttcaattatcatgcagTGCAATCCTGTACTTATAGGAGTATCTTGCAGGGTGCTGAATGTTAGACCAGCTGCATTTTTCTTTATCAAATGCAATCTTCACTCTAAGGAAATTCAAC
tattaatgtgttataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattttgttttggaaatttgataatttaatattttttttcttttaccaaatattaatgtgttataaagaatctgatgttatcatttcaattatcatgcagTGCAATCCTGTACTTATAGGAGTATCTTGCAGGGTGCTGAATGTTAGACCAGCTGCATTTTTCTTTATCAAATGCAATCTTCACTCTAAGGAAATTCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatgt