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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattattttattttatcctttctattacacagatatatgaacattttcctggtattttcatttgaaagtacaattctaatttgcagGTGAGCCGGACCCTGAACTTAAGGTGTCCTGTCGCCAAATATCTCCATTTATACCACATAATTATCGAGATAGTAGTCTTCCTACAGCAGTTTTTGTTTA

Basic information

species Vitis vinifera
transcript Vv05s0051g00910.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0051g00910.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os07g26210.1 (Oryza sativa), 3'ss of exon 4
gtattattttattttatcctttctattacacagatatatgaacattttcc-tggtattttca-tttgaaagtacaatt--------------ctaatttgcagGTGAGCCGGACCCTGAACTTAAGGTGTCCTGTCGCCAAATATCTCCATTTATACCACATAATTATCGAGATAGTAGTCTTCCTACAGCAGTTTTTGTTTA
 || || ||      ||  |   ||  | | | || || | ||||| ||| |  |||    |   |||   ||  | |               |  |||  |||||| || || |||||| | || || || || || ||||||||||| ||||| || ||||| |||| ||| || |||||||||||  | |||||||||||
-taataattaggcacatt-tccgtaaaaaaaaaat-taggcacattgtccataatatcgcaagcatgaggatattactgacaacttcttcggtttgtttaaagGTGAACCTGATCCTGAATTGAAAGTATCTTGCCGGCAAATATCTCCTTTTATTCCCCATAACTATCAAGAGAGCAGTCTTCCTACCTCTGTTTTTGTTTA

upper sequence: Vv05s0051g00910.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT3G24180.2 (Arabidopsis thaliana), 3'ss of exon 9
gtattattttattttatcctttctattacacagatatatgaacattttcctggtattttcatttgaaagtacaattctaatttgcagGTGAGCCGGACCCTGAACTTAAGGTGTCCTGTCGCCAAATATCTCCATTTATACCACATAATTATCGAGATAGTAGTCTTCCTACAGCAGTTTTTGTTTA
|||  |   |     |     ||  ||| |  | ||   | | ||||   | |   | ||  ||| ||  |   ||||  |||  ||||||||| || || ||  | ||| | ||||| || |||||||| || ||||||||| | |||||||||||||||||||||||  |||| |||||||| ||
gtacgaccctgcaggaattcgtcatttaaa--gcta---gcatatttctgtcggtgtatctcttgtaacgattcttctg-tttctagGTGAGCCTGATCCAGAGTTAAAGATTTCCTGCCGGCAAATATCACCTTTTATACCAAACAATTATCGAGATAGTAGTCTTCCAGCAGCTGTTTTTGTATA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatatatgaacattttcctggtattttcatttgaaagtacaattctaatttgcagGTGAGCCGGACCCTGAACTTAAGGTGTCCTGTCGCCAAATATCTCCATTTATACCACATAATTATCGAGATAGTAGTCTTCCTACAGCAGTTTTTGTTTA
                                          ttctaat  putative branch site (score: 2)
                     tattttcatttgaaa  TA-rich tract