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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcagatacatttctgattgtctgatttgtctttttttagATAACTTCAACAGCAGGTGGTGGGACTTTGACCTTGGAATTTGGGGTGCTTAGCCGCTTAACTAATGATCCCA

Basic information

species Vitis vinifera
transcript Vv05s0020g04650.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g04650.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os01g56670.3 (Oryza sativa), 3'ss of exon 6
------------------------------------------------------------gttcagatacatttctgattgtctgatttgtctttttttagATAACTTCAACAGCAGGTGGTGGGACTTTGACCTTGGAATTTGGGGTGCTTAGCCGCTTAACTAATGATCCCA
                                                              | ||||  ||| ||||       ||||   |  |   |||||||||||||||| |||||||| ||||||||  |||||||||| || || || || || |||||||||  | 
catcagtacaagcgttgaaagtagaaaattgtacctggctattagatggacataaacattcctgagattaattactgac-acagcattttagtaataacagATAACTTCAACAGCTGGTGGTGGCACTTTGACACTGGAATTTGGTGTCCTGAGTCGTTTGACTAATGATAGCG

upper sequence: Vv05s0020g04650.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G32320.1 (Glycine max), 3'ss of exon 5
------------------------------------------------------------gttcagatacatttctgattgtctgatttgtctttttttagATAACTTCAACAGCAGGTGGTGGGACTTTGACCTTGGAATTTGGGGTGCTTAGCCGCTTAACTAATGATCCCA
                                                            ||    |||   |  | |  || |  |   | | |  |||||||||||||||||| ||||||||||| |||||  | |||||||| || || ||||| || || |||||||| |
atattttctgagatcagttctgatcttgttttgtttatcatatttcttcaactattttttgtgtttatattgtgttaaaagt-tagtacttttgtgcttagATAACTTCAACAGCTGGTGGTGGGACCTTGACTCTTGAATTTGGAGTTCTAAGCCGATTGACAAATGATCCTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcagatacatttctgattgtctgatttgtctttttttagATAACTTCAACAGCAGGTGGTGGGACTTTGACCTTGGAATTTGGGGTGCTTAGCCGCTTAACTAATGATCCCA
                                                     tttgtcttttttt  CT-rich tract
                                       atttgtcttttttta  TA-rich tract