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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtagaagtgtttcctttctgcagcctattctagccattaactttcttacatggatggttgctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATCTGGAGGCTATGACCCCGACCCCATAATTATCATTTTAAGAAGTCTGGAT

Basic information

species Vitis vinifera
transcript Vv04s0023g02050.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g02050.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G07530.1 (Glycine max), 3'ss of exon 8
--------------------gtgagtagaagtgtttcc-tttctgcagcct--------attctagccattaactt-----tcttacatggatggttgctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATCTGGAGGCTATGACCCCGACCCCA--TAATTATCATTTTAAGAAGTCTGGAT
                    |||| |  || ||| ||  ||| || |  ||        |||  |   ||||| ||     ||||||||||||| || || |||||||||  |||||||| | ||||| ||||||||||| ||||| | |  ||  | | ||  ||      || |  |||  ||  ||  || | ||  |  ||  ||
gtaagctattttcctttaccgtgactcaaattgtgtctatttttggattcttggcactaatttgaatgattaatttatttttcttacatggatgtttccttttgcagGGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAA--CTTCTTTAGAAACTGAATAGCCAATTCCAATTATGTAAAATGTGAATGAAACTCCAT

upper sequence: Vv04s0023g02050.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA01G37790.1 (Glycine max), 3'ss of exon 8
--------------------gtgagtagaagtgt---ttcctttctgcagcct--------attctagccattaactt-----tcttacatggatggttgctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATCTGGAGGCTATGACCCCGACCCCA-TAATTATCATTTTAAGAAGTCTGGAT--
                    |||| |  || | |   | | ||| || |  ||        |||  |   ||||  ||     ||||||||||||| || |  |||||||||  |||||||| | ||||| ||||||||||| ||||| | |  ||  | | ||  ||      || |   || | ||   ||  | || | ||    ||  
gtgagctattttcctttaccgtgactcaaattttgtgtccatttttgaattcttggctgtaatttgaatgattattttatttttcttacatggatgtttccctttgcagGGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAA--CTTCTTTAGAAACTGAATAGCCAATTTCAGTGATCTCCAACTAAATATGTA-AAATGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110408581|gb|EC974217.1|EC974217
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|27584281|gb|CB006976.1|CB006976
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|30137621|gb|CB922959.1|CB922959
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTAC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTAC
EST: gi|110725005|gb|EE101327.1|EE101327
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATCGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAAACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|110714201|gb|EE090834.1|EE090834
EST:     ACGACTTTCTTCCAGCTGATTCTGCCATCAGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCAACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: ACGACTTTCTTCCAGCTGATTCTGCCATT-GAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|110411150|gb|EC976854.1|EC976854
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|110395524|gb|EC961190.1|EC961190
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATCGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|30137219|gb|CB922557.1|CB922557
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATCGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|110383428|gb|EC947801.1|EC947801
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATCGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|110421372|gb|EC987668.1|EC987668
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|32460779|gb|CD801953.1|CD801953
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATCGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|110392954|gb|EC957638.1|EC957638
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATCGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|27582989|gb|CB005684.1|CB005684
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACA
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACA
EST: gi|110716413|gb|EE091375.1|EE091375
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGANGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|30130907|gb|CB916246.1|CB916246
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCT
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCT
EST: gi|110414338|gb|EC980165.1|EC980165
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|110396411|gb|EC962096.1|EC962096
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATCGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|71889039|gb|DT038094.1|DT038094
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATCGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|110729884|gb|EE106328.1|EE106328
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAATGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|30137252|gb|CB922590.1|CB922590
EST:     ACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATNCA-GTACTCAAT                         GGATCTGTATGCTTC
genomic: ACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCAT-CAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTC
EST: gi|110377712|gb|EC942793.1|EC942793
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATCGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|110395846|gb|EC961519.1|EC961519
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATCGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|27586186|gb|CB008881.1|CB008881
EST:     AACGACTTTCTTCCAGCTGATTCTACCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|110687657|gb|EE065313.1|EE065313
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATCGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGANGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|110686674|gb|EE064578.1|EE064578
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATCGAAGCCATCAAGTACTCCAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|351029910|gb|FQ427750.1|FQ427750
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATCGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|110421893|gb|EC988197.1|EC988197
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|27584608|gb|CB007303.1|CB007303
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGT
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGT
EST: gi|110714594|gb|EE091683.1|EE091683
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|18458436|gb|BM436714.1|BM436714
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATCGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|349829323|gb|FQ419855.1|FQ419855
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATCGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|110412461|gb|EC978211.1|EC978211
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|110370067|gb|EC934244.1|EC934244
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATCGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|110401433|gb|EC968043.1|EC968043
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATCGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|110716422|gb|EE091391.1|EE091391
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|22012437|gb|BQ797471.1|BQ797471
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATCGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|27584381|gb|CB007076.1|CB007076
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|349830764|gb|FQ417062.1|FQ417062
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|110393667|gb|EC959071.1|EC959071
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATCGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|71887667|gb|DT036722.1|DT036722
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATCGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|27582969|gb|CB005664.1|CB005664
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|27582243|gb|CB004938.1|CB004938
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTG
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTG
EST: gi|27586396|gb|CB009091.1|CB009091
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|18458205|gb|BM436483.1|BM436483
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATCGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|71866481|gb|DT015536.1|DT015536
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATCGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACA
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACA
EST: gi|110728877|gb|EE104831.1|EE104831
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATCGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|110385769|gb|EC950321.1|EC950321
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATCGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|110695196|gb|EE072933.1|EE072933
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATCGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|22015144|gb|BQ800178.1|BQ800178
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|110393379|gb|EC958573.1|EC958573
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATCGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|30126554|gb|CB911893.1|CB911893
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|110385050|gb|EC949535.1|EC949535
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATCGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|30135495|gb|CB920833.1|CB920833
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|110423715|gb|EC990066.1|EC990066
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|110395733|gb|EC961404.1|EC961404
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATCGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|30135932|gb|CB921270.1|CB921270
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|110405584|gb|EC971127.1|EC971127
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|110697619|gb|EE074766.1|EE074766
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATCGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGANGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|110724479|gb|EE100345.1|EE100345
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|30132904|gb|CB918243.1|CB918243
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|110415749|gb|EC981681.1|EC981681
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|30130791|gb|CB916130.1|CB916130
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|32459164|gb|CD800338.1|CD800338
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|110411133|gb|EC976835.1|EC976835
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|110722998|gb|EE099804.1|EE099804
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCCTAC-TTGTTGAGAGCTTGAAGCAGTGAAACTCAC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCC-TACATTGTTGAGAGCTTGAGGCAGTGAGACTCAT
EST: gi|110393789|gb|EC959280.1|EC959280
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATCGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|349833327|gb|FQ416705.1|FQ416705
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATCGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCCTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|351025456|gb|FQ435148.1|FQ435148
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATCGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|110418356|gb|EC984503.1|EC984503
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|351018517|gb|FQ424624.1|FQ424624
EST:     AACGACTTTCTTCCGGCTGATTCTGCCATCGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|27582191|gb|CB004886.1|CB004886
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|110715188|gb|EE092949.1|EE092949
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
EST: gi|30126319|gb|CB911658.1|CB911658
EST:     AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAAT                         GGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC
genomic: AACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATgtgagtagaa ... gctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctgcagcctattctagccattaactttcttacatggatggttgctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATCTGGAGGCTATGACCCCGACCCCATAATTATCATTTTAAGAAGTCTGGAT
                            ttcttac  putative branch site (score: 2)
                     attaacttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtagaagtgtttcctttctgcagcctattctagccattaactttcttacatggatggttgctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATCTGGAGGCTATGACCCCGACCCCATAATTATCATTTTAAGAAGTCTGGAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT