1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttatctttttgataaaatatctgatgctcatctatgtcatttaatggatatgtgtagcaggtacactaatttatcttttttcatttcttttataatgcagCTTGGAGACAACACTAAGGAACTTTTCCTGCTTAACCACTGGAGATAGTATCATGGTGGCATATAATAATAAGAAATATTACATAGATATTGTAGAGACA
species | Vitis vinifera |
transcript | Vv03s0038g00750.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTACAGCCCCATACAACAGACTTCTTGGATATTTCAAACCCAAAAGCCAT CTTGGAGACAACACTAAGGAACTTTTCCTGCTTAACCACTGGAGATAGTATEST: gi|30126806|gb|CB912145.1|CB912145
genomic: CTACAGCCCCATACAACAGACTTCTTGGATATTTCAAACCCAAAAGCCATgtgagttgtt ... tataatgcagCTTGGAGACAACACTAAGGAACTTTTCCTGCTTAACCACTGGAGATAGTAT
EST: CTACAGCCCCATACAACAGACTTCTTGGATATTTCAAACCCAAAAGCCAT CTTGGAGACAACACTAAGGAACTTTTCCTGCTTAACCACTGGAGATAGTATEST: gi|110416730|gb|EC982730.1|EC982730
genomic: CTACAGCCCCATACAACAGACTTCTTGGATATTTCAAACCCAAAAGCCATgtgagttgtt ... tataatgcagCTTGGAGACAACACTAAGGAACTTTTCCTGCTTAACCACTGGAGATAGTAT
EST: CTACAGCCCCATACAACAGACTTCTTGGATATTTCAAACCCAAAAGCCAT CTTGGAGACAACACTAAGGAACTTTTCCTGCTTAACCACTGGAGATAGTATEST: gi|110698550|gb|EE076176.1|EE076176
genomic: CTACAGCCCCATACAACAGACTTCTTGGATATTTCAAACCCAAAAGCCATgtgagttgtt ... tataatgcagCTTGGAGACAACACTAAGGAACTTTTCCTGCTTAACCACTGGAGATAGTAT
EST: CTACAGCCCCATACAACAGACTTCTTGGATATTTCAAACCCAAAAGCCAT CTTGGAGACAACACTAAGGAACTTTTCCTGCTTAACCACTGGAGATAGTATEST: gi|26262376|gb|CA813439.1|CA813439
genomic: CTACAGCCCCATACAACAGACTTCTTGGATATTTCAAACCCAAAAGCCATgtgagttgtt ... tataatgcagCTTGGAGACAACACTAAGGAACTTTTCCTGCTTAACCACTGGAGATAGTAT
EST: CTACAGCCCCATACAACAGACTTCTTGGATATTTCAAACCCAAAAGCCAT CTTGGAGACAACACTAAGGAACTTEST: gi|26262164|gb|CA813227.1|CA813227
genomic: CTACAGCCCCATACAACAGACTTCTTGGATATTTCAAACCCAAAAGCCATgtgagttgtt ... tataatgcagCTTGGAGACAACACTAAGGAACTT
EST: CTACAGCCCCATACAACAGACTTCTTGGATATTTCAAACCCAAAAGCCAT CTTGGAGACAACACTAAGGAACTTTTCCTGCTTAACCACTGGAGATAGTATEST: gi|71856948|gb|DT006003.1|DT006003
genomic: CTACAGCCCCATACAACAGACTTCTTGGATATTTCAAACCCAAAAGCCATgtgagttgtt ... tataatgcagCTTGGAGACAACACTAAGGAACTTTTCCTGCTTAACCACTGGAGATAGTAT
EST: CTACAGCCCCATACAACAGACTTCTTGGATATTTCAAACCCAAAAGCCAT CTTGGAGACAACACTAAGGAACTTTTCCTGCTTAACCACTGGAGATAGTATEST: gi|110724233|gb|EE099882.1|EE099882
genomic: CTACAGCCCCATACAACAGACTTCTTGGATATTTCAAACCCAAAAGCCATgtgagttgtt ... tataatgcagCTTGGAGACAACACTAAGGAACTTTTCCTGCTTAACCACTGGAGATAGTAT
EST: CTACAGCCCCATACAACAGACTTCTTGGATATTTCAAACCCAAAAGCCAT CTTGGAGACAACACTAAGGAACTTTTCCTGCTTAACCACTGGAGATAGTATEST: gi|110723124|gb|EE100074.1|EE100074
genomic: CTACAGCCCCATACAACAGACTTCTTGGATATTTCAAACCCAAAAGCCATgtgagttgtt ... tataatgcagCTTGGAGACAACACTAAGGAACTTTTCCTGCTTAACCACTGGAGATAGTAT
EST: CTACAGCCCCATACAACAGACTTCTTGGATATTTCAAACCCAAAAGCCAT CTTGGAGACAACACTAAGGAACTTTTCCTGCTTAACCACTGGAGATAGTATEST: gi|294966730|gb|GW837749.1|GW837749
genomic: CTACAGCCCCATACAACAGACTTCTTGGATATTTCAAACCCAAAAGCCATgtgagttgtt ... tataatgcagCTTGGAGACAACACTAAGGAACTTTTCCTGCTTAACCACTGGAGATAGTAT
EST: CTACAGCCCCATACAACAGACTTCTTGGATATTTCAAACCCAAAAGCCAT CTTGGAGACAACACTAAGGAACTTTTCCTGCTTAACCACTGGAGATAGTATEST: gi|110401031|gb|EC967624.1|EC967624
genomic: CTACAGCCCCATACAACAGACTTCTTGGATATTTCAAACCCAAAAGCCATgtgagttgtt ... tataatgcagCTTGGAGACAACACTAAGGAACTTTTCCTGCTTAACCACTGGAGATAGTAT
EST: TACAGCCCCATACAACAGACTTCTTGGATATTTCAAACCCAAAAGCCAT CTTGGAGACAACACTAAGGAACTTTTCCTGCTTAACCACTGGAGATAGTATEST: gi|71868328|gb|DT017383.1|DT017383
genomic: TACAGCCCCATACAACAGACTTCTTGGATATTTCAAACCCAAAAGCCATgtgagttgtt ... tataatgcagCTTGGAGACAACACTAAGGAACTTTTCCTGCTTAACCACTGGAGATAGTAT
EST: CTACAGCCCCATACAACAGACTTCTTGGATATTTCAAACCCAAAAGCCAT CTTGGAGACAACACTAAGGAACTTTTCCTGCTTAACCACTGGAGATAGTATEST: gi|110391465|gb|EC956442.1|EC956442
genomic: CTACAGCCCCATACAACAGACTTCTTGGATATTTCAAACCCAAAAGCCATgtgagttgtt ... tataatgcagCTTGGAGACAACACTAAGGAACTTTTCCTGCTTAACCACTGGAGATAGTAT
EST: CTACAGCCCCATACAACAGACTTCTTGGATATTTCAAACCCAAAAGCCAT CTTGGAGACAACACTAAGGAACTTTTCCTGCTTAACCACTGGAGATAGTAT
genomic: CTACAGCCCCATACAACAGACTTCTTGGATATTTCAAACCCAAAAGCCATgtgagttgtt ... tataatgcagCTTGGAGACAACACTAAGGAACTTTTCCTGCTTAACCACTGGAGATAGTAT
ggatatgtgtagcaggtacactaatttatcttttttcatttcttttataatgcagCTTGGAGACAACACTAAGGAACTTTTCCTGCTTAACCACTGGAGATAGTATCATGGTGGCATATAATAATAAGAAATATTACATAGATATTGTAGAGACA
cactaat putative branch site (score: 2)
tttatcttttttcatt CT-rich tract
tacactaatttatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatctttttgataaaatatctgatgctcatctatgtcatttaatggatatgtgtagcaggtacactaatttatcttttttcatttcttttataatgcagCTTGGAGACAACACTAAGGAACTTTTCCTGCTTAACCACTGGAGATAGTATCATGGTGGCATATAATAATAAGAAATATTACATAGATATTGTAGAGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - gataaaa
- - - - - - - - - - - - -gctcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaggta