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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaggcatcttaaagtacaagtggttaaaacttcaaatatggtgcattatatgtattaacaggtggcctgtttgatctttattattactttctgattgcagCCCTCCTGCAATTGAGAGGCTGACAAGCGGCCTTTTTCAAGAGGTGATCATTACAAACACAATTCCAACGCAGGAGAAAAACTACTTCCCCCAGTTGACT

Basic information

species Vitis vinifera
transcript Vv02s0012g00530.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|45368105|gb|CK906464.1|CK906464
EST:     CAAGAGGGGGCCAGGGAAGTCTATGCCTGCTGTACTCATGCTGTTTTTAG                         CCCTCCTGCAATTGAGAGGCTGACAAGCGGCCTTTTTCAAGAGGTGATCAT
genomic: CAAGAGGGGGCCAGGGAAGTCTATGCCTGCTGTACTCATGCTGTTTTTAGgtattctctt ... ctgattgcagCCCTCCTGCAATTGAGAGGCTGACAAGCGGCCTTTTTCAAGAGGTGATCAT
EST: gi|30253440|gb|CB970991.1|CB970991
EST:     CAAGAGGGGGCCAGGGAAGTCTATGCCTGCTGTACTCATGCTGTTTTTAG                         CCCTCCTGCAATTGAGAGGCTGACAAGCGGCCTTTTTCAAGAGGTGATCAT
genomic: CAAGAGGGGGCCAGGGAAGTCTATGCCTGCTGTACTCATGCTGTTTTTAGgtattctctt ... ctgattgcagCCCTCCTGCAATTGAGAGGCTGACAAGCGGCCTTTTTCAAGAGGTGATCAT
EST: gi|30129654|gb|CB914993.1|CB914993
EST:     CAAGAGGGGGCCAGGGAAGTCTATGCCTGCTGTACTCATGCTGTTTTTAG                         CCCTCCTGCAATTGAG
genomic: CAAGAGGGGGCCAGGGAAGTCTATGCCTGCTGTACTCATGCTGTTTTTAGgtattctctt ... ctgattgcagCCCTCCTGCAATTGAG
EST: gi|161721761|gb|FC071122.1|FC071122
EST:     CAAGAGGGGGCCAGGGAAGTCTATGCCTGCTGTACTCATGCTGTTTTTAG                         CCCTCCTGCAATTGAGAGGCTGACAAGCGGCCTTTTTCAAGAGGTGATCAT
genomic: CAAGAGGGGGCCAGGGAAGTCTATGCCTGCTGTACTCATGCTGTTTTTAGgtattctctt ... ctgattgcagCCCTCCTGCAATTGAGAGGCTGACAAGCGGCCTTTTTCAAGAGGTGATCAT
EST: gi|110730668|gb|EE108008.1|EE108008
EST:     CAAGAGGGGGCCAGGGAAGTCTATGCCTGCTGTACTCATGCTGTTTTTAG                         CCCTCCTGCAATTGAGAGGCTGACAAGCGGCCTTTTTCAAGAGGTGATCAT
genomic: CAAGAGGGGGCCAGGGAAGTCTATGCCTGCTGTACTCATGCTGTTTTTAGgtattctctt ... ctgattgcagCCCTCCTGCAATTGAGAGGCTGACAAGCGGCCTTTTTCAAGAGGTGATCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatatgtattaacaggtggcctgtttgatctttattattactttctgattgcagCCCTCCTGCAATTGAGAGGCTGACAAGCGGCCTTTTTCAAGAGGTGATCATTACAAACACAATTCCAACGCAGGAGAAAAACTACTTCCCCCAGTTGACT
                                      ttactttct  CT-rich tract
                        tttgatctttattatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaggcatcttaaagtacaagtggttaaaacttcaaatatggtgcattatatgtattaacaggtggcctgtttgatctttattattactttctgattgcagCCCTCCTGCAATTGAGAGGCTGACAAGCGGCCTTTTTCAAGAGGTGATCATTACAAACACAATTCCAACGCAGGAGAAAAACTACTTCCCCCAGTTGACT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - aaagtaca
- - - - - - - - - - - - -aaaactt
- - - - - - - - - - - - - - - - caaatat
- - - - - - - - - - - - - - - - - - - - gtgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgttt