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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatacccttatgtctgcacttcttttatctggtttttgttgcacttgattatcctggttatgatagggattgccacctgaacttctgttacatgttccatgtgatttatttcagGAGGTCACAGGTATTTACACGAATAATTTTGACCTCTCCCTGAATACGAAGAATGGATTTCCTGTATTTGCCACTGTAGTCGAGGCAAATTATGTCACAA

Basic information

species Vitis vinifera
transcript Vv01s0150g00390.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0150g00390.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os11g29380.1 (Oryza sativa), 3'ss of exon 8
gtaatacccttatgtctgcacttcttttatctggtttttgttgcacttgattatcctggttatgatagggattgccacctgaacttctgttacatgttccatgtgatttatttcagGAGGTCACAGGTATTTACACGAATAATTTTGACCTCTCCCTGAATACGAAGAATGGATTTCCTGTATTTGCCACTGTAGTCGAGGCAAATTATGTCACAA
                 | |  |||| |   ||    || ||  | ||    ||| |  |   || ||    | | |  |||   ||||         ||||||        |||||||||||| || || ||||| || ||||||||| | ||  ||||||| |||||||| || || || |||||||| ||||| |||||||| |||||  |||
-----------------gtaagtcttctgcatgtaccttttt-tatttctacatcttattgtagaaagcatgttctaattgactatctgc--------ccatgt--------tcagGAGGTCACTGGGATATACACCAACAATTTTGACTTGTCTTTGAATACAAAGAATGGTTTCCCAGTTTTTGCCACAGTAGTGGAGGCAAACTATGTGGCAA

upper sequence: Vv01s0150g00390.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G139894_T01 (Zea mays), 3'ss of exon 8
gtaatacccttatgtctgcacttcttttatctggtttttgttgcacttgattatcctggttatgatagggattgccacctgaacttctgttacatgttccatgtgatttatttcagGAGGTCACAGGTATTTACACGAATAATTTTGACCTCTCCCTGAATACGAAGAATGGATTTCCTGTATTTGCCACTGTAGTCGAGGCAAATTATGTCACAA
                               |  ||||| || ||| | |  ||     ||    |    ||| |    |||| |    | ||||  ||  |||   |   | ||||||||||| || || ||||| |||||||||||||| ||  ||||||| |||||||| || ||||| |||||||| || || |||||||| |||||  |||
------------------------------gtaatttttctt-cacct-accatttgcttttcatttcatattactttttgaattagactgacat--tcagtgttgctgtctccagGAGGTCACTGGGATATACACAAATAATTTTGACCTGTCTTTGAATACAAAGAATGGTTTCCCTGTTTTTGCCACAGTGGTTGAGGCAAACTATGTGGCAA

upper sequence: Vv01s0150g00390.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G36680.1 (Glycine max), 3'ss of exon 7
gtaatacccttatgtctgcacttcttttatctggtttttgttgcacttgattatcctggttatgatagggattgccacctgaacttctgttacatgttccatgtgatttatttcagGAGGTCACAGGTATTTACACGAATAATTTTGACCTCTCCCTGAATACGAAGAATGGATTTCCTGTATTTGCCACTGTAGTCGAGGCAAATTATGTCACAA
                           ||||   ||||   |  |||  ||||   |  |     | ||  ||      |||  ||||    ||| |||        ||||||||||||||||||||| |||| || |||||||||||| | ||||| || || || ||||| ||||| || ||||||||||| || |||||||||||||| || |
--------------------------gtatcatcttttaccttgactc-attaattttttgcccttgggtgttatagaatgattttcttaatcattttc--------ttatttcagGAGGTCACAGGTGTTTATACCAATAATTTTGACTTATCCCTTAACACAAAAAATGGGTTTCCAGTGTTTGCCACTGTTGTTGAGGCAAATTATGTTACGA

upper sequence: Vv01s0150g00390.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G03920.1 (Glycine max), 3'ss of exon 7
gtaatacccttatgtctgcacttcttttatctggtttttgttgcacttgattatcctggttatgatagggattgccacctgaacttctgttacatgttccatgtgatttatttcagGAGGTCACAGGTATTTACACGAATAATTTTGACCTCTCCCTGAATACGAAGAATGGATTTCCTGTATTTGCCACTGTAGTCGAGGCAAATTATGTCACAA
            | ||  |  ||  |||  ||  |   | ||      |     | | ||| | |||            ||| |||||    ||| |||        ||||||||||||||||||||| |||| || |||||||||||| | ||| | || || || ||||| ||||| || ||||||||||| || |||||||||||||| || |
-----------gtatcatcttttactttgactcatcaattttttggccggcc--cttagttgttatataa---------tgaccttcttaatcattttc--------ttatttcagGAGGTCACAGGTGTTTATACCAATAATTTTGACTTATCCTTAAACACAAAAAATGGGTTTCCAGTGTTTGCCACTGTTGTTGAGGCAAATTATGTTACGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37189746|gb|CF609095.1|CF609095
EST:     TGATACTCTTGAACGATTTGATTGATTGTGCCCGCCCGGGGGAAGAGATT                         GAGGTCACAGGTATTTACACGAATAATTTTGACCTCTCCCTGAATACGAAG
genomic: TGATACTCTTGAACGATTTGATTGATTGTGCCCGCCCGGGGGAAGAGATTgtaataccct ... tttatttcagGAGGTCACAGGTATTTACACGAATAATTTTGACCTCTCCCTGAATACGAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgatagggattgccacctgaacttctgttacatgttccatgtgatttatttcagGAGGTCACAGGTATTTACACGAATAATTTTGACCTCTCCCTGAATACGAAGAATGGATTTCCTGTATTTGCCACTGTAGTCGAGGCAAATTATGTCACAA
                                             tttatttc  CT-rich tract
                                          tgatttattt  TA-rich tract