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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgaaattgcttcttttttctttttttcatttttaacttttggtattccatcattctggaattgttctctctcttctgacttgacgctttttcttggtcttgttcaaaccatagCACATGCAAATCATTCCAAGTTCCCGACTGTTGTCCATTCCAATTATCCATTGGATGTTTCAAACAATGGCTCTACAAGTGATGATAAGCCATGGCGTGC

Basic information

species Vitis vinifera
transcript Vv19s0090g01780.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122690545|gb|EC954055.1|EC954055
EST:     CAATCAGCTCCACCATGGCTATTCCTTGGATGAACTAAAAGTCTTGGAAG                         CACATGCAAATCATTCCAAGTTCCCGACTGTTGTCCATTCCAATTATCCAT
genomic: CAATCAGCTCCACCATGGCTATTCCTTGGATGAACTAAAAGTCTTGGAAGgtctgaaatt ... caaaccatagCACATGCAAATCATTCCAAGTTCCCGACTGTTGTCCATTCCAATTATCCAT
EST: gi|254916472|gb|GR904330.1|GR904330
EST:     CAATCAGCTCCACCATGGCTATTCCTTGGATGAACTAAAAGTCTTGGAAG                         CACATGCAAATCATTCCAAGTTCCCGACTGTTGTCCATTCCAATTATCCAT
genomic: CAATCAGCTCCACCATGGCTATTCCTTGGATGAACTAAAAGTCTTGGAAGgtctgaaatt ... caaaccatagCACATGCAAATCATTCCAAGTTCCCGACTGTTGTCCATTCCAATTATCCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattgttctctctcttctgacttgacgctttttcttggtcttgttcaaaccatagCACATGCAAATCATTCCAAGTTCCCGACTGTTGTCCATTCCAATTATCCATTGGATGTTTCAAACAATGGCTCTACAAGTGATGATAAGCCATGGCGTGC
                                      tcttgttc  CT-rich tract
                            tttttctt  TA-rich tract