Sequence
atgc intronic sequence ATGC exonic sequence...gaattgtacagtggattcatgttgtttgtgtttcttttggattgtattactgagttgggctgttattctatggtcttcacttgcaaaattttcagtgcagATGCTGATGTACGGCTGGCAAGGAGAATTAGGCGTGATACAGTTGAGAAGGGTAGAGATATTGGTATGGTACTTGATCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G45270.1 (Glycine max), 3'ss of exon 6
gaattgtacagtggattcatgttgtttgtgtttcttttgg--attgtattactgagttgg-gctgttattctatg--gtcttcac-ttgcaaaattttcagtgcagATGCTGATGTACGGCTGGCAAGGAGAATTAGGCGTGATACAGTTGAGAAGGGTAGAGATATTGGTATGGTACTTGATCAG
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------gattttagattgttattatttgtacttctacttgccaacttgttacctatatgtcattgttaagttaagctgtctttacattttaaaatgttcagtgcagATGCTGATGTTCGTTTGGCAAGAAGAATTAGGCGTGACACTACTGAGAAGGGTCGGGATATTGGAGCAGTTCTTGATCAG
upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA18G08180.1 (Glycine max), 3'ss of exon 6
-------gaattgtacagtggattcatgttgtttgtgtttct-tttggattgtattactgagttgggctgttattctatggtcttcacttgcaaaattttcagtgcagATGCTGATGTACGGCTGGCAAGGAGAATTAGGCGTGATACAGTTGAGAAGGGTAGAGATATTGGTATGGTACTTGATCAG-
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tgattttagattattatttgtacttctattggtcaaattgttacctatatgtctttgttaagttaagctgtcactttatattt---------aaaatgttcagtgcagaTGCTGATGTTCGTTTGGCAAGAAGGATTAGGCGTGACACTACTGAGAAGGGTCGGGATATTGGAGCAGTTCTTGATCAGG
upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA02G47270.1 (Glycine max), 3'ss of exon 6
gaattgtacagtggattcatgttgtttgtgtttcttttggattgtattactgagttgggctgttattctatggtcttcacttgcaaaattttcagtgcagATGCTGATGTACGGCTGGCAAGGAGAATTAGGCGTGATACAGTTGAGAAGGGTAGAGATATTGGTATGGTACTTGATCAG
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tatgtcttccttctagctattttacaagcatgcatattttatgtctttattgcactactaagttatgctatcaatttacattgtgaaatgttcagtgcagATGCTGATGTTCGTCTGGCTAGAAGAATTAAGCGTGATACTGCTGACAATGCTCGTGATATTGGAGCTGTGCTTGATCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718287|gb|FC066969.1|FC066969EST: TGATCTTCGTGTCCGGGAATTGATGAACATGAAGATATTTGTTGATACAG ATGCTGATGTACGGCTGGCAAGGAGAATTAGGCGTGATACAGTTGAGAAGG
genomic: TGATCTTCGTGTCCGGGAATTGATGAACATGAAGATATTTGTTGATACAGgttctttctt ... ttcagtgcagATGCTGATGTACGGCTGGCAAGGAGAATTAGGCGTGATACAGTTGAGAAGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attactgagttgggctgttattctatggtcttcacttgcaaaattttcagtgcagATGCTGATGTACGGCTGGCAAGGAGAATTAGGCGTGATACAGTTGAGAAGGGTAGAGATATTGGTATGGTACTTGATCAG
ttttc CT-rich tract
aaaattttca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaattgtacagtggattcatgttgtttgtgtttcttttggattgtattactgagttgggctgttattctatggtcttcacttgcaaaattttcagtgcagATGCTGATGTACGGCTGGCAAGGAGAATTAGGCGTGATACAGTTGAGAAGGGTAGAGATATTGGTATGGTACTTGATCAG
- - - - - - - - tcatgtt
- - - - - - - - - - - - - - - - -cttttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gggctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaatt