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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataggtccttgggatgttgctgggcccaatattgtcatttcttgtttcttgctcctgaggcccagcttaggtggcaagaaattggatggggatgttgaggcgcaaggtttaactcaatgttaacaaaaatacctataaaaatattgttcttctttgctcatttaatttcttgcagTTGTTACTTGGCATCAACCATGCAAGTTGTGTTCTCAACACAGTCCTTCCATTCACG

Basic information

species Vitis vinifera
transcript Vv19s0014g03920.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g03920.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA12G22240.1 (Glycine max), 3'ss of exon 6
gtaataggtccttgggatgttgctgggcccaatattgtcatttcttgtttcttgctcctgaggcccagcttaggtggcaagaaattggatggggatgttgaggcgcaaggtttaactcaatgttaacaaaaatacctataaaaatattgttcttctttgctcatttaatttcttgcagTTGTTACTTGGCATCAACCATGCAAGTTGTGTTCTCAACACAGTCCTTCCATTCACG
                                                                                           |    ||||   |  |   |||  ||   | |||  ||| | |  | | | | |  |||  ||| ||      ||  |||||| |||||||||| ||||| |||| |||||||||||||| ||||||   ||||||   |||||
-------------------------------------------------------------------------------------------gtagagttggtccctactatttt-ctgcttattataaaatacaagtttgacacttctgtatttcatt------ttgttttcttccagTTGTTACATGGCAGCAACTATGCAAGTTGTGTTTTCAACAAGATCCTTCACATCACG

upper sequence: Vv19s0014g03920.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA06G39770.1 (Glycine max), 3'ss of exon 6
gtaataggtccttgggatgttgctgggcccaatattgtcatttcttgtttcttgctcctgaggcccagcttaggtggcaagaaattggatggggatgttgaggcgcaaggtttaactcaatgttaacaaaaatacctataaaaatattgttcttctttgctcatttaatttcttgcagTTGTTACTTGGCATCAACCATGCAAGTTGTGTTCTCAACACAGTCCTTCCATTCACG
                                                                                            | |  ||  | | | |    |  ||   | |||  ||| |    | | | | | ||||  |||       ||||  |||||| |||||||||| ||||| |||| || ||||||||||| ||||||   ||||||   |||||
--------------------------------------------------------------------------------------------gtagatttggtccctactaattgctgcttattataaaatactagtttgacactcttgtatttc-------atttgttttcttccagTTGTTACATGGCAGCAACTATTCAAGTTGTGTTTTCAACAAGATCCTTCACATCACG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161719286|gb|FC068262.1|FC068262
EST:     GAACCACTATTTGGACCTGGCTATACAGGACTTGTCAATCTTGGAAACAG                         TTGTTACTTGGCATCAACCATGCAAGTTGTGTTCTCAACACAGTCCTTCCA
genomic: GAACCACTATTTGGACCTGGCTATACAGGACTTGTCAATCTTGGAAACAGgtaataggtc ... tttcttgcagTTGTTACTTGGCATCAACCATGCAAGTTGTGTTCTCAACACAGTCCTTCCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taacaaaaatacctataaaaatattgttcttctttgctcatttaatttcttgcagTTGTTACTTGGCATCAACCATGCAAGTTGTGTTCTCAACACAGTCCTTCCATTCACG
                                             tttcttgc  CT-rich tract
     aaaatacctataaaaa  TA-rich tract