Sequence
atgc intronic sequence ATGC exonic sequence...ctttacctttccactgaaaattttcccgactctttaaactttcgaaagtttttttttcagtcacttggtgtaaacttagtgtttttcctgttctatgcagAGCCAACTTGGGGGTAAATTGTTGATTTTCCAGAATACACTGCCTTCTCTTGGTGTTGGCCGCCTGAAGCTGCGTGGTGATGACCTTCGTGTTTATGGAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0014g01900.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA19G41400.2 (Glycine max), 3'ss of exon 6
ctttacctttccactgaaaattttcccgactctttaaactttcgaaagtttttttttcagtcacttggtgtaaacttagtgtttttcctgt-tctatgcagAGCCAACTTGGGGGTAAATTGTTGATTTTCCAGAATACACTGCCTTCTCTTGGTGTTGGCCGCCTGAAGCTGCGTGGTGATGACCTTCGTGTTTATGGAA
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cgctaaatttaagagaactacatccactgagaactaaatttaacaatgtcatttttcttatc-cttactttgttgtggtcttttcatgcatgtgtatgcagAGTCAACTTGGAGGAAAATTGTTAATATTTCAAAACACACTCCCATCTCTTGGTGTTGGCCGCTTGAAGTTACGTGGAGATGATTCTCGTGTTTACGGGA
upper sequence: Vv19s0014g01900.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA03G38830.1 (Glycine max), 3'ss of exon 5
ctttacctt-tccactgaaaattttcccgactctttaaactttcgaaagtttttttttcagtcacttggtgtaaacttagtgtttt--tcctgttctatgcagAGCCAACTTGGGGGTAAATTGTTGATTTTCCAGAATACACTGCCTTCTCTTGGTGTTGGCCGCCTGAAGCTGCGTGGTGATGACCTTCGTGTTTATGGAA
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-tttattgagttttctgtacatttttcctttgcattga--tttagcaatgtcatttttcttatacgttactttgttgtcgtcttttcatgcatcactttgcagAGTCAACTTGGAGGGAAATTGTTAATATTTCAAAACACACTTCCATCTCTTGGTGTTGGCCGCTTGAAGTTACGTGGAGATGATTCTCGTGTTTACGGGA
upper sequence: Vv19s0014g01900.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA10G28520.1 (Glycine max), 3'ss of exon 6
ctttacctttccactgaaaattttcccgactctttaaactttcgaa----agtttttttttcagtcacttggtgtaaacttagtgtttttcctgttctatgcagAGCCAACTTGGGGGTAAATTGTTGATTTTCCAGAATACACTGCCTTCTCTTGGTGTTGGCCGCCTGAAGCTGCGTGGTGATGACCTTCGTGTTTATGGAA
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ccattcacttagaatgtggaatttcagtgcatgttttccaccccaatcccaatttcttatgcatttcactgttgtgaactt----tccctgcctctttatacagAGTCAACTTGGAGGGAAATTGTTAATTTTTCAAAACACACTCCCATCTCTTGGTGTTGGTCGCTTGAAATTACGTGGAGATGATTCTAAAGTTTATGGCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagtttttttttcagtcacttggtgtaaacttagtgtttttcctgttctatgcagAGCCAACTTGGGGGTAAATTGTTGATTTTCCAGAATACACTGCCTTCTCTTGGTGTTGGCCGCCTGAAGCTGCGTGGTGATGACCTTCGTGTTTATGGAA
tgtttttcctgttct CT-rich tract
tttttttca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctttacctttccactgaaaattttcccgactctttaaactttcgaaagtttttttttcagtcacttggtgtaaacttagtgtttttcctgttctatgcagAGCCAACTTGGGGGTAAATTGTTGATTTTCCAGAATACACTGCCTTCTCTTGGTGTTGGCCGCCTGAAGCTGCGTGGTGATGACCTTCGTGTTTATGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - -cctttcc
- - - - - - - -gaaaatt
- - - - - - - - - - - - -ccgactc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttggtg