Sequence
atgc intronic sequence ATGC exonic sequence...catcaccaccctttttttccttttgtatatgtattttaatatttttacatttcatatatatttttaatatttttaaatctatgttcatgcattttggcagGATTCACTTGGTGGTAACAGCAGAACTGTCATGATAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g10090.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA17G35780.1 (Glycine max), 3'ss of exon 6
-catcaccaccctttttttccttttgtatatgtattttaatatttttacatttcatatatatttttaatatttttaaatctatgttcatgcattttggcagGATTCACTTGGTGGTAACAGCAGAACTGTCATGATAG
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tttgagttgatcttcaacagattttatattca-atttttttttctttgatttttttaacagttatttttgtatttatggataaagttaaatgattttgcagGATTCACTTGGTGGTAACAGCAGAACTGTTATGATAG
upper sequence: Vv18s0001g10090.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA14G09390.1 (Glycine max), 3'ss of exon 6
-catcaccaccctttttttccttttgtatatgtattttaatatttttacatttcatatatatttttaatatttttaaatctatgttcatgcattttggcagGATTCACTTGGTGGTAACAGCAGAACTGTCATGATAG
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aggaaacatgtatatgaaagattttatattcaaattttctttcttttatttttttta-acaattattttgtatttatggataaagttaaataattttgcagGATTCACTTGGTGGTAACAGCAGAACTGTTATGATAG
upper sequence: Vv18s0001g10090.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA06G04520.1 (Glycine max), 3'ss of exon 6
catcaccaccctttttttccttttgtatatgtattttaatatttttacatttcatatatatttttaatattttta-aatctatgttcatgcattttggcagGATTCACTTGGTGGTAACAGCAGAACTGTCATGATAG
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caaaatattttgttttctaattttctttgatttttttagtttaatcat-ttttatattattcaataatatatttatagatgaaagttaaatgattttgcagGATTCACTAGGAGGTAACAGCAGAACTGTCATGATAG
upper sequence: Vv18s0001g10090.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA04G04380.1 (Glycine max), 3'ss of exon 6
catcaccaccctttttttccttttgtatatgtattttaatatttttacatt-tcatatatatt-tttaatatttttaaatctatgttcatgcattttggcagGATTCACTTGGTGGTAACAGCAGAACTGTCATGATAG
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-tgtacgaaacattttgttttcaatttttctttctttgatcttttagtttaatcatttttattatttgatatttatagatgaaagttaaatgattttg-cagGATTCACTAGGAGGTAACAGCAGAACTTTCATGATAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tacatttcatatatatttttaatatttttaaatctatgttcatgcattttggcagGATTCACTTGGTGGTAACAGCAGAACTGTCATGATAG
ttttaat putative branch site (score: 3)
ttcatatatattttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
catcaccaccctttttttccttttgtatatgtattttaatatttttacatttcatatatatttttaatatttttaaatctatgttcatgcattttggcagGATTCACTTGGTGGTAACAGCAGAACTGTCATGATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - caccctt
- - - - - - - - - ccttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcatgc