1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgtcatgtagactttcactttacaactacattaggaatatagtttgaactcatcaaatgttaaatgttctatgacttgcctcgtttctgttttttaatagGTGAAATTGTGAAGTACCTATTTCAGCAATATGGTAAAGGAAAAAGTCCCTCAACTGGGCTTTTGGAAAG
species | Vitis vinifera |
transcript | Vv18s0001g06900.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTTCCCTTTCCTTATTGACCCAAACACTGGTATCTCAATGTATGAAAGTG GTGAAATTGTGAAGTACCTATTTCAGCAATATGGTAAAGGAAAAAGTCCCTEST: gi|110396178|gb|EC961859.1|EC961859
genomic: GTTCCCTTTCCTTATTGACCCAAACACTGGTATCTCAATGTATGAAAGTGgtaagtgatg ... tttttaatagGTGAAATTGTGAAGTACCTATTTCAGCAATATGGTAAAGGAAAAAGTCCCT
EST: TTCCCTTTTCCTTATTGACCCAAACACTGGTATCTCAATGTATGAAAGTG GTGAAATTGTGAAGTACCTATTTCAGCAATATGGTAAAGGAAAAAGTCCCTEST: gi|22013797|gb|BQ798831.1|BQ798831
genomic: TTCCC-TTTCCTTATTGACCCAAACACTGGTATCTCAATGTATGAAAGTGgtaagtgatg ... tttttaatagGTGAAATTGTGAAGTACCTATTTCAGCAATATGGTAAAGGAAAAAGTCCCT
EST: GTTCCCTTTCCTTATTGACCCAAACACTGGTATCTCAATGTATGAAAGTG GTGAAATTGTGAAGTACCTATTTCAGCAATATGGTAAAGGAAAAAGTCCCT
genomic: GTTCCCTTTCCTTATTGACCCAAACACTGGTATCTCAATGTATGAAAGTGgtaagtgatg ... tttttaatagGTGAAATTGTGAAGTACCTATTTCAGCAATATGGTAAAGGAAAAAGTCCCT
gaactcatcaaatgttaaatgttctatgacttgcctcgtttctgttttttaatagGTGAAATTGTGAAGTACCTATTTCAGCAATATGGTAAAGGAAAAAGTCCCTCAACTGGGCTTTTGGAAAG
cttgcctcgtttctgt CT-rich tract
tttctgttttttaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtcatgtagactttcactttacaactacattaggaatatagtttgaactcatcaaatgttaaatgttctatgacttgcctcgtttctgttttttaatagGTGAAATTGTGAAGTACCTATTTCAGCAATATGGTAAAGGAAAAAGTCCCTCAACTGGGCTTTTGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- tcatgta
- - - - - -ctttcac
- - - - - - - - - - - caactac
- - - - - - - - - - - - - - - - aggaata
- - - - - - - - - - - - - - - - - - - - - - - -actcatc