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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatacttactttgtttcttttattggtttttattgtctagtccatatcaattcttttctattggtttgtgcctgcagCAAAACAATCTCTTTAAGTCTCGGGAAGAGAAATACCAGTCGAGAATCAGAGTACTTGAAACCCTTGCAACTGGGACTAATGATGAAAACCAG

Basic information

species Vitis vinifera
transcript Vv17s0000g03700.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g03700.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA05G35130.1 (Glycine max), 3'ss of exon 5
---------------------------gtaatatacttactttgtttcttttattggtttttattgtctagtccatatcaattcttttctattggtttgtgcctgcagCAAAACAATCTCTTTAAGTCTCGGGAAGAGAAATACCAGTCGAGAATCAGAGTACTTGAAACCCTTGCAACTGGGACTAATGATGAAAACCAG
                             ||  || ||| || ||| |||||| |  | |  ||  | |  ||||||||| |||||  |        | || || |||||||||||||| || ||| |||||||||| |||||||| |||||||| |||||||||||  | |||||| |||| ||||  ||||| |   ||
gtatgttatgttcgttacattattttcaaaagctagttatttagttacttttagtt-tctcaataattttctccatatcacttcttaccc-------tatgacttcagCAAAACAATCTTTTCAAGGCTCGGGAAGAAAAATACCAATCGAGAATAAGAGTACTTGAGGCACTTGCATCTGGAACTAGAGATGAGAGTGAG

upper sequence: Vv17s0000g03700.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA07G10190.1 (Glycine max), 3'ss of exon 3
-----------gtaatatacttactttgtttcttttattggtttttattgtctagtccat--atcaattctt----ttctattggtttgtgcctgcagCAAAACAATCTCTTTAAGTCTCGGGAAGAGAAATACCAGTCGAGAATCAGAGTACTTGAAACCCTTGCAACTGGGACTAATGATGAAAACCAG
              |||   ||| |||      ||  ||    ||| || | || || ||  ||   ||||     || | ||  | | |||||  ||||||||||||| |||||| |||| ||||| ||||| || || | ||||| |||||||||  |  ||||| ||   || || || || |   ||
gtaagtcaattactataacattattttcaaaagttagttaacctttgttttttactcaattgattttttctcaccattttcttactatttgcctttagCAAAACAATCTTTTTAAGGCTCGTGAAGAAAAATATCACTCAAAAATCAAAGTACTTGAGGCTTTTGCATCTAAAACCAAGGAAGAGACTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtttttattgtctagtccatatcaattcttttctattggtttgtgcctgcagCAAAACAATCTCTTTAAGTCTCGGGAAGAGAAATACCAGTCGAGAATCAGAGTACTTGAAACCCTTGCAACTGGGACTAATGATGAAAACCAG
                     atatcaattctttt  TA-rich tract