1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgcaattgttaccttcttagttcatacctattatttttgtatagtgttgtgcaaaaaactttctggattatgaaaccctgttgttacttaatactttcagGTCATGTTCCAGCATTCAGTTAGGCATTCTCCTCTGAGCATTGATGATCTGTTAGCATCCATTACCTCGACAAATGATCAAGAAAAGGAAGCCTGTGATG
species | Vitis vinifera |
transcript | Vv17s0000g01420.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACCTGGGCAAGGTGAATCGAGCACGTGCTTTCGCAGATAGTTATTCCAAG GTCATGTTCCAGTATTCAGTTAGGCATTCTCCTCTGAGCATTGATGATCTGEST: gi|122688906|gb|EC927599.1|EC927599
genomic: ACCTGGGCAAGGTGAATCGAGCACGTGCTTTCGCAGATAGTTATTCCAAGgttggtggaa ... atactttcagGTCATGTTCCAGCATTCAGTTAGGCATTCTCCTCTGAGCATTGATGATCTG
EST: ACCTGGGCAAGGTGAATCGAGCACGTGCTTTTGCAGATAGTTATTCCAAG GTCATGTTCCAGTATTCAGTTAGGCATTCTCCTCTGAGCATTGATGATCTG
genomic: ACCTGGGCAAGGTGAATCGAGCACGTGCTTTCGCAGATAGTTATTCCAAGgttggtggaa ... atactttcagGTCATGTTCCAGCATTCAGTTAGGCATTCTCCTCTGAGCATTGATGATCTG
gttgtgcaaaaaactttctggattatgaaaccctgttgttacttaatactttcagGTCATGTTCCAGCATTCAGTTAGGCATTCTCCTCTGAGCATTGATGATCTGTTAGCATCCATTACCTCGACAAATGATCAAGAAAAGGAAGCCTGTGATG
acttaat putative branch site (score: 4)
tactttc CT-rich tract
ttacttaatacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcaattgttaccttcttagttcatacctattatttttgtatagtgttgtgcaaaaaactttctggattatgaaaccctgttgttacttaatactttcagGTCATGTTCCAGCATTCAGTTAGGCATTCTCCTCTGAGCATTGATGATCTGTTAGCATCCATTACCTCGACAAATGATCAAGAAAAGGAAGCCTGTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - tgttacc
- - - - - - - - - - - catacct
- - - - - - - - - - - - - - - - - - - - - - tgttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - -caaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgttg