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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatatatgactcattattgaactaattttgtggttcatgttccatttatagataatgtgaaatttactgcactagggaacagctgaaaccttataatattataaaacattaaaatctacatttcagcatcttctgatattggtatgtacttgttgcagCCACTCCTAACTATTGATGTGTGGGAG

Basic information

species Vitis vinifera
transcript Vv16s0013g00260.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33403651|gb|CF209278.1|CF209278
EST:     TCGTGGTGAAGAGTCCTAATGCCATAAACCCCCTGCTTTGGGATTGCTAT                         CCACTCCTAACTATTGATGTGTGGGAG
genomic: TTGTGGTGAAGAGTCCTAATGCCATAAACCCCCTGCTTTGGGATTGCAATgtgagtatat ... cttgttgcagCCACTCCTAACTATTGATGTGTGGGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacattaaaatctacatttcagcatcttctgatattggtatgtacttgttgcagCCACTCCTAACTATTGATGTGTGGGAG
                           ttctgat  putative branch site (score: 3)
     ttaaaatctacattt  TA-rich tract