Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggccatggctatgatttccaagaatgctatatatgaaaccatcataatctccctagaaaaaaaaatggtgaatcatgctttggagatagtgggattttacttagaacatgtcctcataagatctctcacacttaatttctcttctttcagTGCTCGTAATATTCAAAGGCTGATGAAGAAGCTGAGGCAGAACCATTTGCAGGGTTTCTCAGCATAATATTCATAGACTCCATTTTCTTCTTGGTGCAGG

Basic information

species Vitis vinifera
transcript Vv15s0046g02010.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26262854|gb|CA813917.1|CA813917
EST:     ACCAGTTCATTGAGAAGTATGTGATCATGTTGTTGTAAACACTAGAAAAG                         TGCTCGTAATATTCAAAGGCTGATGAAGAAGCTGAGGCAGAACCATTTGCA
genomic: ACCAGTTCATTGAGAAGTATGTGATCATGTTGTTGTAAACACTAGAAAAGgtaggccatg ... cttctttcagTGCTCGTAATATTCAAAGGCTGATGAAGAAGCTGAGGCAGAACCATTTGCA
EST: gi|110397781|gb|EC963671.1|EC963671
EST:     ACCAGTTCATTGAGAAGTATGTGATCATGTTGTTGTAAACACTAGAAAAG                         TGCTCGTAATATTCAAAGGCTGATGAAGAAGCTGAGGCAGAACCATTTGCA
genomic: ACCAGTTCATTGAGAAGTATGTGATCATGTTGTTGTAAACACTAGAAAAGgtaggccatg ... cttctttcagTGCTCGTAATATTCAAAGGCTGATGAAGAAGCTGAGGCAGAACCATTTGCA
EST: gi|352764716|gb|FQ471776.1|FQ471776
EST:     ACCAGTTCATTGAGAAGTATGTGATCATGTTGTTGTAAACACTAGAAAAG                         TGCTCGTAATATTCAAAGGCTGATGAAGAAGCTGAGGCAGAACCATTTGCA
genomic: ACCAGTTCATTGAGAAGTATGTGATCATGTTGTTGTAAACACTAGAAAAGgtaggccatg ... cttctttcagTGCTCGTAATATTCAAAGGCTGATGAAGAAGCTGAGGCAGAACCATTTGCA
EST: gi|110381451|gb|EC934491.1|EC934491
EST:     ACCAGTTCATTGAGAAGTATGTGATCATGTTGTTGTAAACACTAGAAAAG                         TGCTCGTAATATTCAAAGGCTGATGAAGAAGCTGAGGCAGAACCATTTGCA
genomic: ACCAGTTCATTGAGAAGTATGTGATCATGTTGTTGTAAACACTAGAAAAGgtaggccatg ... cttctttcagTGCTCGTAATATTCAAAGGCTGATGAAGAAGCTGAGGCAGAACCATTTGCA
EST: gi|30329963|gb|CD013225.1|CD013225
EST:     ACCAGTTCATTGAGAAGTATGTGATCATGTTGTTGTAAACACTAGAAAAG                         TGCTCGTAATATTCAAAGGCTGATGAAGAAGCTGAGGCAGAACCATTTGCA
genomic: ACCAGTTCATTGAGAAGTATGTGATCATGTTGTTGTAAACACTAGAAAAGgtaggccatg ... cttctttcagTGCTCGTAATATTCAAAGGCTGATGAAGAAGCTGAGGCAGAACCATTTGCA
EST: gi|34363711|gb|CF405296.1|CF405296
EST:     ACCAGTTCATTGAGAAGTATGTGATCATGTTGTTGTAAACACTAGAAAAG                         TGCTCGTAATATTCAAAGGCTGATGAAGAAGCTGAGGCAGAACCATTTGCA
genomic: ACCAGTTCATTGAGAAGTATGTGATCATGTTGTTGTAAACACTAGAAAAGgtaggccatg ... cttctttcagTGCTCGTAATATTCAAAGGCTGATGAAGAAGCTGAGGCAGAACCATTTGCA
EST: gi|110399790|gb|EC966316.1|EC966316
EST:     ACCAGTTCATTGAGAAGTATGTGATCATGTTGTTGTAAACACTAGAAAAG                         TGCTCGTAATATTCAAAGGCTGATGAAGAAGCTGAGGCAGAACCATTTGCA
genomic: ACCAGTTCATTGAGAAGTATGTGATCATGTTGTTGTAAACACTAGAAAAGgtaggccatg ... cttctttcagTGCTCGTAATATTCAAAGGCTGATGAAGAAGCTGAGGCAGAACCATTTGCA
EST: gi|26258173|gb|CA809236.1|CA809236
EST:     ACCAGTTCATTGAGAAGTATGTGATCATGTTGTTGTAAACACTAGAAAAG                         TGCTCGTAATATTCAAAGGCTGATGAAGAAGCTGAGGCAGAACCATTTGCA
genomic: ACCAGTTCATTGAGAAGTATGTGATCATGTTGTTGTAAACACTAGAAAAGgtaggccatg ... cttctttcagTGCTCGTAATATTCAAAGGCTGATGAAGAAGCTGAGGCAGAACCATTTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttacttagaacatgtcctcataagatctctcacacttaatttctcttctttcagTGCTCGTAATATTCAAAGGCTGATGAAGAAGCTGAGGCAGAACCATTTGCAGGGTTTCTCAGCATAATATTCATAGACTCCATTTTCTTCTTGGTGCAGG
                          tctctcacacttaatt  CT-rich tract
                                  acttaattt  TA-rich tract