1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gcattaattttctgcttggttttcctgaatgcacatactctttggaatttaattgaaatattttccatgctttgtttctttattgccattttgcttccagCACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGCCCAGGACGCATAGACCTTGGAAGAAGATCATAGTTGTTGTGGAGGGAAT
species | Vitis vinifera |
transcript | Vv14s0068g01300.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATA CACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACACCEST: gi|349823630|gb|FQ415040.1|FQ415040
genomic: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATAgtaagtcttg ... ttgcttccagCACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGC
EST: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATA CACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGCEST: gi|349832894|gb|FQ423016.1|FQ423016
genomic: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATAgtaagtcttg ... ttgcttccagCACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGC
EST: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATA CACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGCEST: gi|351033557|gb|FQ447716.1|FQ447716
genomic: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATAgtaagtcttg ... ttgcttccagCACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGC
EST: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATA CACCCTCTCATTTGGAGGA-GTTTTGAGAGAACAA-TTGCTGAAAGACAGCEST: gi|351041981|gb|FQ456191.1|FQ456191
genomic: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATAgtaagtcttg ... ttgcttccagCACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGC
EST: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATA CACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGCEST: gi|351054108|gb|FQ450190.1|FQ450190
genomic: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATAgtaagtcttg ... ttgcttccagCACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGC
EST: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATA CACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGCEST: gi|352773004|gb|FQ470619.1|FQ470619
genomic: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATAgtaagtcttg ... ttgcttccagCACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGC
EST: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCA-CATAATA CACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGCEST: gi|351046320|gb|FQ448625.1|FQ448625
genomic: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATAgtaagtcttg ... ttgcttccagCACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGC
EST: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATA CACCCTCTCATTTGGAGGAAGTTTTGAGAGGACAAATTGCTGAAGGAEST: gi|351054020|gb|FQ441786.1|FQ441786
genomic: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATAgtaagtcttg ... ttgcttccagCACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGA
EST: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATA CACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGCEST: gi|349807664|gb|FQ402055.1|FQ402055
genomic: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATAgtaagtcttg ... ttgcttccagCACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGC
EST: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATA CACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGCEST: gi|349820492|gb|FQ408442.1|FQ408442
genomic: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATAgtaagtcttg ... ttgcttccagCACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGC
EST: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATA CACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGCEST: gi|349822627|gb|FQ412891.1|FQ412891
genomic: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATAgtaagtcttg ... ttgcttccagCACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGC
EST: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATA CACCCTCTCATTTGGAGGAAGTTTTGAGAGAEST: gi|351015401|gb|FQ447230.1|FQ447230
genomic: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATAgtaagtcttg ... ttgcttccagCACCCTCTCATTTGGAGGAAGTTTTGAGAGA
EST: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATA CACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGCEST: gi|349819166|gb|FQ412060.1|FQ412060
genomic: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATAgtaagtcttg ... ttgcttccagCACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGC
EST: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATA CACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGCEST: gi|349820920|gb|FQ408628.1|FQ408628
genomic: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATAgtaagtcttg ... ttgcttccagCACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGC
EST: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATA CACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGCEST: gi|351056259|gb|FQ453721.1|FQ453721
genomic: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATAgtaagtcttg ... ttgcttccagCACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGC
EST: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATA CACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGCEST: gi|352782149|gb|FQ470051.1|FQ470051
genomic: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATAgtaagtcttg ... ttgcttccagCACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGC
EST: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATA CACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGCEST: gi|351037559|gb|FQ462542.1|FQ462542
genomic: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATAgtaagtcttg ... ttgcttccagCACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGC
EST: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATA CACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGCEST: gi|349813001|gb|FQ411241.1|FQ411241
genomic: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATAgtaagtcttg ... ttgcttccagCACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGC
EST: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATA CACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGCEST: gi|351021667|gb|FQ437052.1|FQ437052
genomic: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATAgtaagtcttg ... ttgcttccagCACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGC
EST: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAAC-TAATA CACCCTCTCATTTGGAAGAAGTTTTGAAAGAACAAEST: gi|349822644|gb|FQ412908.1|FQ412908
genomic: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATAgtaagtcttg ... ttgcttccagCACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAA
EST: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATA CACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGCEST: gi|352789617|gb|FQ476215.1|FQ476215
genomic: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATAgtaagtcttg ... ttgcttccagCACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGC
EST: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATA CACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAA-TTGCTGAAGGACAGCEST: gi|351032559|gb|FQ458924.1|FQ458924
genomic: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATAgtaagtcttg ... ttgcttccagCACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGC
EST: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATA CACCCTCTCATTTGGAGGAAGTTTTGAGAAAACAAATTGCTGAAAGACAGCEST: gi|352772806|gb|FQ473844.1|FQ473844
genomic: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATAgtaagtcttg ... ttgcttccagCACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGC
EST: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATA CACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAAGACAGCEST: gi|349808891|gb|FQ406741.1|FQ406741
genomic: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATAgtaagtcttg ... ttgcttccagCACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGC
EST: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATA CACCCTCTCATTTGGAGGAAGTTTTGAGAGAACCAATTGCTGAAAGACAGCEST: gi|351032958|gb|FQ461847.1|FQ461847
genomic: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATAgtaagtcttg ... ttgcttccagCACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGC
EST: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATA CACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGCEST: gi|349823382|gb|FQ402581.1|FQ402581
genomic: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATAgtaagtcttg ... ttgcttccagCACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGC
EST: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATA CACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAAGACAGCEST: gi|349826514|gb|FQ418605.1|FQ418605
genomic: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATAgtaagtcttg ... ttgcttccagCACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGC
EST: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATA CACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGCEST: gi|349810608|gb|FQ402851.1|FQ402851
genomic: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATAgtaagtcttg ... ttgcttccagCACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGC
EST: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATA CACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGCEST: gi|351057058|gb|FQ448575.1|FQ448575
genomic: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATAgtaagtcttg ... ttgcttccagCACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGC
EST: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATA CACCCTCTCATTTGGAGGGAGTTTTAAGAGACCAAATTGCTGAAGGACAGC
genomic: GAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATAgtaagtcttg ... ttgcttccagCACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGC
aatttaattgaaatattttccatgctttgtttctttattgccattttgcttccagCACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGCCCAGGACGCATAGACCTTGGAAGAAGATCATAGTTGTTGTGGAGGGAAT
atttaat putative branch site (score: 4)
ttttgcttcc putative PPT
aattgaaatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcattaattttctgcttggttttcctgaatgcacatactctttggaatttaattgaaatattttccatgctttgtttctttattgccattttgcttccagCACCCTCTCATTTGGAGGAAGTTTTGAGAGAACAAATTGCTGAAGGACAGCCCAGGACGCATAGACCTTGGAAGAAGATCATAGTTGTTGTGGAGGGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - tgcttgg
- - - - - - - - - - -ttcctga
- - - - - - - - - - - - - - - -cacatac
- - - - - - - - - - - - - - - - - - - - - - - - - aattgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgccat