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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctcacctttaaattttgttgtggttgagcttgcctcccttgcctgatgttggctgtttttctgggtctttaacttttgtgcaaatcttcaatagggaggctcactagctaattcttgcgagtttgcacttctttctcattgccaacattaacagtgacttttgtggaaaccaatacagGGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATACACATCTTGGAATCG

Basic information

species Vitis vinifera
transcript Vv11s0016g03460.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32265262|gb|CD716851.1|CD716851
EST:     CTTGCTAAAAGGTATCGGGACTCTACAACAAATCGCCATATTCCTTACAG                         GGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATACACA
genomic: CTTGCTAAAAGGTATCGGGACTCTACAACAAATCGCCATATTCCTTACAGgtatctcacc ... accaatacagGGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATACACA
EST: gi|71859743|gb|DT008798.1|DT008798
EST:     CTTGCTAAAAGATATCGGGACTCTACAACAAATCGCCATATTCCTTACAG                         GGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATA
genomic: CTTGCTAAAAGGTATCGGGACTCTACAACAAATCGCCATATTCCTTACAGgtatctcacc ... accaatacagGGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATA
EST: gi|71859339|gb|DT008394.1|DT008394
EST:     CTTGCTAAAAGATATCGGGACTCTACAACAAATCGCCATATTCCTTACAG                         GGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATACACA
genomic: CTTGCTAAAAGGTATCGGGACTCTACAACAAATCGCCATATTCCTTACAGgtatctcacc ... accaatacagGGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATACACA
EST: gi|30328832|gb|CD012094.1|CD012094
EST:     CCATATTCCTTACAG                         GGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATACACA
genomic: CCATATTCCTTACAGgtatctcacc ... accaatacagGGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATACACA
EST: gi|71859319|gb|DT008374.1|DT008374
EST:     CTTGCTAAAAGATATCGGGACTCTACAACAAATCGCCATATTCCTTACAG                         GGAGAATAAGAACTTAACTGGAACTGCACTTTATGCAAGTTGCAATACACA
genomic: CTTGCTAAAAGGTATCGGGACTCTACAACAAATCGCCATATTCCTTACAGgtatctcacc ... accaatacagGGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATACACA
EST: gi|71864880|gb|DT013935.1|DT013935
EST:     CTTGCTAAAAGGTGTCGGGACTCTACAACAAATCGCCATATTCCTTACAG                         GGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATACACA
genomic: CTTGCTAAAAGGTATCGGGACTCTACAACAAATCGCCATATTCCTTACAGgtatctcacc ... accaatacagGGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATACACA
EST: gi|32250210|gb|CD716029.1|CD716029
EST:     CTTGCTAAAAGGTATCGGGACTCTACAACAAATCGCCATATTCCTTACAG                         GGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATACACA
genomic: CTTGCTAAAAGGTATCGGGACTCTACAACAAATCGCCATATTCCTTACAGgtatctcacc ... accaatacagGGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATACACA
EST: gi|71858976|gb|DT008031.1|DT008031
EST:     CTTGCTAAAAGATATCGGGACTCTACAACAAATCGCCATATTCCTTACAG                         GGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATACACA
genomic: CTTGCTAAAAGGTATCGGGACTCTACAACAAATCGCCATATTCCTTACAGgtatctcacc ... accaatacagGGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATACACA
EST: gi|71860850|gb|DT009905.1|DT009905
EST:     CTTGCTAAAAGGTATCGGGACTCTACAACAAATCGCCATATTCCTTACAG                         GGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATACACA
genomic: CTTGCTAAAAGGTATCGGGACTCTACAACAAATCGCCATATTCCTTACAGgtatctcacc ... accaatacagGGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATACACA
EST: gi|71863133|gb|DT012188.1|DT012188
EST:     CTTGCTAAAAGGTATCGGGACTCTACAACAAATCGCCATATTCCTTACAG                         GGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATACACA
genomic: CTTGCTAAAAGGTATCGGGACTCTACAACAAATCGCCATATTCCTTACAGgtatctcacc ... accaatacagGGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATACACA
EST: gi|110373710|gb|EC938001.1|EC938001
EST:     CTTGCTAAAAGATATCGGGACTCTACAACAAATCGCCATATTCCTTACAG                         GGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATACACA
genomic: CTTGCTAAAAGGTATCGGGACTCTACAACAAATCGCCATATTCCTTACAGgtatctcacc ... accaatacagGGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATACACA
EST: gi|71863496|gb|DT012551.1|DT012551
EST:     CTTGCTAAAAGGTATCGGGACTCTACAACAAATCGCCATATTCCTTACAG                         GGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATACACA
genomic: CTTGCTAAAAGGTATCGGGACTCTACAACAAATCGCCATATTCCTTACAGgtatctcacc ... accaatacagGGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATACACA
EST: gi|71873064|gb|DT022119.1|DT022119
EST:     CTTGCTAAAAGATATCGGTACTCTACAACAAATCGCCATATTCCTTACAG                         GGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATACACA
genomic: CTTGCTAAAAGGTATCGGGACTCTACAACAAATCGCCATATTCCTTACAGgtatctcacc ... accaatacagGGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATACACA
EST: gi|110702369|gb|EE081005.1|EE081005
EST:     CTTGCTAAAAGGTATCGGGACTCTACAACAAATCGCCATATTCCTTACAG                         GGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATACACA
genomic: CTTGCTAAAAGGTATCGGGACTCTACAACAAATCGCCATATTCCTTACAGgtatctcacc ... accaatacagGGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATACACA
EST: gi|352781444|gb|FQ468288.1|FQ468288
EST:     CTTGCTAAAAGGTATCGGGACTCTACAACAAATCGCCATATTCCTTACAG                         GGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATACACA
genomic: CTTGCTAAAAGGTATCGGGACTCTACAACAAATCGCCATATTCCTTACAGgtatctcacc ... accaatacagGGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATACACA
EST: gi|27580104|gb|CB002799.1|CB002799
EST:     CTTGCTAAAAGGTATCGGGACTCTACAACAAATCGCCATATTCCTTACAG                         GGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATACACA
genomic: CTTGCTAAAAGGTATCGGGACTCTACAACAAATCGCCATATTCCTTACAGgtatctcacc ... accaatacagGGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATACACA
EST: gi|352768395|gb|FQ469571.1|FQ469571
EST:     CTTGCTAAAAGGTATCGGGACTCTACAACAAATCGCCATATTCCTTACAG                         GGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATACACA
genomic: CTTGCTAAAAGGTATCGGGACTCTACAACAAATCGCCATATTCCTTACAGgtatctcacc ... accaatacagGGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATACACA
EST: gi|110710321|gb|EE086552.1|EE086552
EST:     CTTGCTAAAAGATATCGGGACTCTACAACAAATCGCCATATTCCTTACAG                         GGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATACACA
genomic: CTTGCTAAAAGGTATCGGGACTCTACAACAAATCGCCATATTCCTTACAGgtatctcacc ... accaatacagGGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATACACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcacttctttctcattgccaacattaacagtgacttttgtggaaaccaatacagGGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATACACATCTTGGAATCG
                      cattaac  putative branch site (score: 2)
                    aacattaa  TA-rich tract