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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgaaatcattgaaattgttgtgtgcccataaaaatccagaggcaagtttgcttcttccttgttctaatttactgaattcattgtttccccttttgatatcatggttatacaagattgaaggttttctttcatcagGTACAAAAGTTAGCTTTGTTAGCAGTTGGAAATTTAGCCTTCTGTTTGGAGAATCGCCGTACTCTGGTTACTTCTGAAAGCTTGAGGGAACTTCTCTTGC

Basic information

species Vitis vinifera
transcript Vv10s0116g00830.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g00830.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA17G01850.1 (Glycine max), 3'ss of exon 6
gtattgaaatcattgaaattgttgtgtgcccataaaaatccagaggcaagtttgcttcttccttgttctaatttactgaattcattgtttccccttttgatatcatggttatacaagattgaaggttttctttcatcagGTACAAAAGTTAGCTTTGTTAGCAGTTGGAAATTTAGCCTTCTGTTTGGAGAATCGCCGTACTCTGGTTACTTCTGAAAGCTTGAGGGAACTTCTCTTGC
                                             ||||||| | |||||| | |     ||  ||| ||||   |||| |   | |||    |  |||  |  ||  || | | || || |||   ||||||||| | ||||| ||||||| ||||| ||||| |||||| || |||| |||||||| |  || ||| |||||||||||||  | ||||||||||| |
---------------------------------------------gcaagttagtttcttcatag-----atagactaaatt---tgttccttatattg----cgcggtcctttaaattttaggtttatccttctatagGTACAAAGGCTAGCTCTGTTAGCTGTTGGGAATTTGGCCTTCAGTCTGGAAAATCGCCGCATACTTGTTTCTTCTGAAAGCTTACGAGAACTTCTCTTAC

upper sequence: Vv10s0116g00830.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA07G38890.1 (Glycine max), 3'ss of exon 5
gtattgaaatcattgaaattgttgtgtgcccataaaaatccagaggcaagtttgcttcttccttgttctaatttactgaattcattgtttccccttttgatatcatggttatacaagattgaaggttttctttcatcagGTACAAAAGTTAGCTTTGTTAGCAGTTGGAAATTTAGCCTTCTGTTTGGAGAATCGCCGTACTCTGGTTACTTCTGAAAGCTTGAGGGAACTTCTCTTGC-------------
                                                 ||| | |||||| | | |   | | ||| ||||  ||  ||         ||||    ||  |   |  || | | || || |||   ||||||||| | ||||| ||||||| ||||| ||||| |||||| || |||| ||||| || |  || ||| |||||||||||||  | ||||||||||| |             
-------------------------------------------------gttagtttcttcatagat---agtgactaaattggttcctt---------atattgcagtcctttgaattttaggtttatccttctataggtacaaaggctagCTCTGTTAGCTGTTGGGAATTTGGCCTTCAGTCTGGAAAATCGTCGCATACTTGTTTCTTCTGAAAGCTTACGAGAACTTCTCTTACGTCTAGCTGTTGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtttccccttttgatatcatggttatacaagattgaaggttttctttcatcagGTACAAAAGTTAGCTTTGTTAGCAGTTGGAAATTTAGCCTTCTGTTTGGAGAATCGCCGTACTCTGGTTACTTCTGAAAGCTTGAGGGAACTTCTCTTGC
          ttttgat  putative branch site (score: 4)
                                         ttttctttcatc  putative PPT
          ttttgatat  TA-rich tract