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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaactcattgcataattattttgtgatatagggttgtttcaagagtttctttagtttatctttcttcatctttccccttaacagtggcttttctttagGTGCTTCTCTTGTAGTAGCCATACATGCTGTCAAGAAAGGGGCAGCTGCAGAGGGAATGAAGGTGAGAGATTATGTTTGGCGTGGTCATGATCCTACATC

Basic information

species Vitis vinifera
transcript Vv09s0054g00220.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g00220.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA07G02280.1 (Glycine max), 3'ss of exon 6
gtacaactcattgcataattattttgtgatatagggttgtttcaagagtttctttagtttatctttcttcatctttccccttaacagtggcttttctttagGTGCTTCTCTTGTAGTAGCCATACATGCTGTCAAGAAAGGGGCAGCTGCAGAGGGAATGAAGGTGAGAGATTATGTTTGGCGTGGTCATGATCCTACATC
         ||||| |       ||   || | |      |  |  |   || || || ||| || | || | |    | | ||       |||   ||||||||||||||| | || |||||||| |||||||||||||| |||||||| |||||||||||  | ||||| ||| ||||||| || ||||||||||||||
-------gtattgc-tgtcggcatttcaatctggatgcagtctatta---tcctttgtctat-ttccatcctttccttcttcaatgagcattttctgttagGTGCTTCTCTTATTGTTGCCATACAAGCTGTCAAGAAAGGTGCAGCTGCGGAGGGAATGAAATTAAGAGACTATATTTGGCGAGGCCATGATCCTACATC

upper sequence: Vv09s0054g00220.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G23740.1 (Glycine max), 3'ss of exon 6
gtacaactcattgcataattattttgtgatatagggttgtttcaagagtttctttagtttatctttcttcatctttccccttaacagtggcttttctttagGTGCTTCTCTTGTAGTAGCCATACATGCTGTCAAGAAAGGGGCAGCTGCAGAGGGAATGAAGGTGAGAGATTATGTTTGGCGTGGTCATGATCCTACATC
                         ||  |   |  |   ||  |   |   |  ||| ||| | | | | | |    | | ||       |||   | |||||| |||||| | || |||||||| |||||||||||||| || |||||||||||||||||  | ||||| ||| ||||||| || |||||||| |||||
-------------------------gtactgctgtctgcatttcaatctgaatgcagtctatttctgtcc-tttccttcttcaatgagcattttctgtcagGTGCCTCTCTTATTGTTGCCATACAAGCTGTCAAGAAAGGTGCTGCTGCAGAGGGAATGAAATTAAGAGACTATATTTGGCGAGGCCATGATCCCACATC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtttctttagtttatctttcttcatctttccccttaacagtggcttttctttagGTGCTTCTCTTGTAGTAGCCATACATGCTGTCAAGAAAGGGGCAGCTGCAGAGGGAATGAAGGTGAGAGATTATGTTTGGCGTGGTCATGATCCTACATC
                                ccttaac  putative branch site (score: 3)
                                            cttttcttt  putative PPT
      tttagtttatcttt  TA-rich tract