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...attagaaatgggaatcgagatggattatttgtgaaaaagagcatttttttccaagtaacaataactatttctaaccaaatttggcttttaaaaaatgcagATGGGATTTAAATGGATATTTGTGTTGTCACTTGCACTTCTCCAAGCAGCTTACTACCGACGCCTAAAATGGTCAATCTTCAAGTCCCGTAAGCTGATTG
species | Vitis vinifera |
transcript | Vv09s0002g05950.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCACATTTTTATCATGGGCTGCAGAGCCAGAAATGGAAGAGAGAAAACTG ATGGGATTTAAATGGATATTTGTGTTGTCACTTGCACTTCTCCAAGCAGCTEST: gi|110423661|gb|EC990009.1|EC990009
genomic: TCACATTTTTATCATGGGCTGCAGAGCCAGAAATGGAAGAGAGAAAACTGgtaatgttat ... aaaaatgcagATGGGATTTAAATGGATATTTGTGTTGTCACTTGCACTTCTCCAAGCAGCT
EST: TCACATTTTTATCATGGGCTGCAGAGCCAGAAATGGAAGAGAGAAAACTG ATGGGATTTAAATGGATATTTGTGTTGTCACTTGCACTTCTCCAAGCAGCTEST: gi|30321061|gb|CD004323.1|CD004323
genomic: TCACATTTTTATCATGGGCTGCAGAGCCAGAAATGGAAGAGAGAAAACTGgtaatgttat ... aaaaatgcagATGGGATTTAAATGGATATTTGTGTTGTCACTTGCACTTCTCCAAGCAGCT
EST: TCACATTTTTATCATGGGCTGCAGAGCCAGAAATGGAAGAGAGAAAACTG ATGGGATTTAAATGGATATTTGTGTTGTCACTTGCACTTCTCCAAGCAGCTEST: gi|110698992|gb|EE077122.1|EE077122
genomic: TCACATTTTTATCATGGGCTGCAGAGCCAGAAATGGAAGAGAGAAAACTGgtaatgttat ... aaaaatgcagATGGGATTTAAATGGATATTTGTGTTGTCACTTGCACTTCTCCAAGCAGCT
EST: TCACATTTTTATCATGGGCTGCAGAGCCAGAAATGGAAGAGAGAAAACTG ATGGGATTTAAATGGATATTTGTGTTGTCACTTGCACTTCTCCAAGCAGCTEST: gi|349813644|gb|FQ413878.1|FQ413878
genomic: TCACATTTTTATCATGGGCTGCAGAGCCAGAAATGGAAGAGAGAAAACTGgtaatgttat ... aaaaatgcagATGGGATTTAAATGGATATTTGTGTTGTCACTTGCACTTCTCCAAGCAGCT
EST: TCACATTTTTATCATGGGCTGCAGAGCCAGAAATGGAAGAGAGAAAACTG ATGGGATTTAAATGGATATEST: gi|110694100|gb|EE070911.1|EE070911
genomic: TCACATTTTTATCATGGGCTGCAGAGCCAGAAATGGAAGAGAGAAAACTGgtaatgttat ... aaaaatgcagATGGGATTTAAATGGATAT
EST: TCACATTTTTATCATGGGCTGCAGAGCCAGAAATGGAAGAGAGAAAACTG ATGGGATTTAAATGGATATTTGTGTTGTCACTTGCACTTCTCCAAGCAGCTEST: gi|110428516|gb|EC994990.1|EC994990
genomic: TCACATTTTTATCATGGGCTGCAGAGCCAGAAATGGAAGAGAGAAAACTGgtaatgttat ... aaaaatgcagATGGGATTTAAATGGATATTTGTGTTGTCACTTGCACTTCTCCAAGCAGCT
EST: TCACATTTTTATCATGGGCTGCAGAGCCAGAAATGGAAGAGAGAAAACTG ATGGGATTTAAATGGATATTTGTGTTGTCACTTGCACTTCTCCAAGCAGCTEST: gi|34547391|gb|CF515623.1|CF515623
genomic: TCACATTTTTATCATGGGCTGCAGAGCCAGAAATGGAAGAGAGAAAACTGgtaatgttat ... aaaaatgcagATGGGATTTAAATGGATATTTGTGTTGTCACTTGCACTTCTCCAAGCAGCT
EST: TCACATTTTTATCATGGGCTGCAGAGCCAGAAATGGAAGAGAGAAAACTG ATGGGATTTAAATGGATATTTGTGTTGTCACTTGCACTTCTCCAAGCAGCTEST: gi|351033244|gb|FQ462016.1|FQ462016
genomic: TCACATTTTTATCATGGGCTGCAGAGCCAGAAATGGAAGAGAGAAAACTGgtaatgttat ... aaaaatgcagATGGGATTTAAATGGATATTTGTGTTGTCACTTGCACTTCTCCAAGCAGCT
EST: TCACATTTTTATCATGGGCTGCAGAGCCAGAAATGGAAGAGAGAAAACCG ATGGGATTTAAATGGATATTTGTGEST: gi|34547301|gb|CF515533.1|CF515533
genomic: TCACATTTTTATCATGGGCTGCAGAGCCAGAAATGGAAGAGAGAAAACTGgtaatgttat ... aaaaatgcagATGGGATTTAAATGGATATTTGTG
EST: TCACATTTTTATCATGGGCTGCAGAGCCAGAAATGGAAGAGAGAAAACTG ATGGGATTTAAATGGATATTTGTGTTGTCACTTGCACTTCTCCAAGCAGCTEST: gi|30320467|gb|CD003729.1|CD003729
genomic: TCACATTTTTATCATGGGCTGCAGAGCCAGAAATGGAAGAGAGAAAACTGgtaatgttat ... aaaaatgcagATGGGATTTAAATGGATATTTGTGTTGTCACTTGCACTTCTCCAAGCAGCT
EST: TCACATTTTTATCATGGGCTGCAGAGCCAGAAATGGAAGAGAGAAAACTG ATGGGATTTAAATGGATATTTGTGTTGTCACTTGCACTTCTCCAAGCAGCTEST: gi|110417035|gb|EC983057.1|EC983057
genomic: TCACATTTTTATCATGGGCTGCAGAGCCAGAAATGGAAGAGAGAAAACTGgtaatgttat ... aaaaatgcagATGGGATTTAAATGGATATTTGTGTTGTCACTTGCACTTCTCCAAGCAGCT
EST: TCACATTTTTATCATGGGCTGCAGAGCCAGAAATGGAAGAGAGAAAACTG ATGGGATTTAAATGGATATTTGTGTTGTCACTTGCACTTCTCCAAGCAGCTEST: gi|110378867|gb|EC944022.1|EC944022
genomic: TCACATTTTTATCATGGGCTGCAGAGCCAGAAATGGAAGAGAGAAAACTGgtaatgttat ... aaaaatgcagATGGGATTTAAATGGATATTTGTGTTGTCACTTGCACTTCTCCAAGCAGCT
EST: TCACATTTTTATCATGGGCTGCAGAGCCAGAAATGGAAGAGAGAAAACTG ATGGGATTTAAATGGATATTTGTGTTGTCACTTGCACTTCTCCAAGCAGCTEST: gi|349809896|gb|FQ398521.1|FQ398521
genomic: TCACATTTTTATCATGGGCTGCAGAGCCAGAAATGGAAGAGAGAAAACTGgtaatgttat ... aaaaatgcagATGGGATTTAAATGGATATTTGTGTTGTCACTTGCACTTCTCCAAGCAGCT
EST: TCACATTTTTATCATGGGCTGCAGAGCCAGAAATGGAAGAGAGAAAACTG ATGGGATTTAAATGGATATTTGTGTTGTC-CTTG
genomic: TCACATTTTTATCATGGGCTGCAGAGCCAGAAATGGAAGAGAGAAAACTGgtaatgttat ... aaaaatgcagATGGGATTTAAATGGATATTTGTGTTGTCACTTG
tttttccaagtaacaataactatttctaaccaaatttggcttttaaaaaatgcagATGGGATTTAAATGGATATTTGTGTTGTCACTTGCACTTCTCCAAGCAGCTTACTACCGACGCCTAAAATGGTCAATCTTCAAGTCCCGTAAGCTGATTG
ttctaac putative branch site (score: 1)
taacaataactattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attagaaatgggaatcgagatggattatttgtgaaaaagagcatttttttccaagtaacaataactatttctaaccaaatttggcttttaaaaaatgcagATGGGATTTAAATGGATATTTGTGTTGTCACTTGCACTTCTCCAAGCAGCTTACTACCGACGCCTAAAATGGTCAATCTTCAAGTCCCGTAAGCTGATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - -aaaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - caataac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggcttt