Sequence
atgc intronic sequence ATGC exonic sequence...tagtctgatgattttgtatggatcaaatgatgatagcattgcatgatggacaaggttgacctataatgggcctgactttgggctgatttggataatgcagGAGAGATGATTGTTGGGCCTACAAAAACGCTGTTTATGGACGAGATATCAACTGGGCTGGACAGCTCTACTACGTTTCAGATTGTGAAGTGCTTGCAGCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g03550.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G366146_T01 (Zea mays), 3'ss of exon 2
tagtctgatgattttgtatggatcaaatgatgatagcattgcatgatggacaaggtt--gacctataatgggcctgact-ttgggctgatttggataatgcagGAGAGATGATTGTTGGGCCTACAAAAACGCTGTTTATGGACGAGATATCAACTGGGCTGGACAGCTCTACTACGTTTCAGATTGTGAAGTGCTTGCAGCA
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--gtaccatttcaaagccggttttatatgaagct-gcacggttttctgaacattttcaggacgcatgatatttgagataactgttcttatttttggaatgcagGAGAGATGATTGTTGGCCCGACCAAGGTGCTATTCATGGACGAGATATCAACTGGGCTGGACAGCTCCACGACATTCCAAATCGTCAAATGTCTCCAGCA
upper sequence: Vv09s0002g03550.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G029506_T01 (Zea mays), 3'ss of exon 6
tagtctgatgattttgtatggatcaaatgatga--tagcattgcatgatggacaaggttgacctataatgggcctgactt---tgggctgatttggataatgcagGAGAGATGATTGTTGGGCCTACAAAAACGCTGTTTATGGACGAGATATCAACTGGGCTGGACAGCTCTACTACGTTTCAGATTGTGAAGTGCTTGCAGCA
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----agcaccatttcaaaccggtttatatatgaatccgcacggttttctgaacattttcagggtgcatgatgtttgagatagctgtgcttatcttgg-aacgcagGGGAGATGATCGTTGGCCCGACCAAGGTGCTGTTCATGGACGAGATATCAACTGGGCTGGACAGCTCCACGACGTTCCAGATCGTCAAATGTCTCCAGCA
upper sequence: Vv09s0002g03550.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA07G01860.1 (Glycine max), 3'ss of exon 8
------tagtctgatgattttgtatggatcaaatgatgatagcattgcatgatggacaaggttgacctataatgggc-ctgactttgggctgatttggat--aatgcagGAGAGATGATTGTTGGGCCTACAAAAACGCTGTTTATGGACGAGATATCAACTGGGCTGGACAGCTCTACTACGTTTCAGATTGTGAAGTGCTTGCAGCA
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tacgtgtacccaatttagattgtggcaatccaaggatgaaa----tgcataattatccaaatt-----ataatgatttctcacatgaaatggtttttgattttatacagGAGAGATGATTGTTGGGCCCACAAAAACACTATTCATGGATGAAATATCAACGGGTCTTGATAGTTCCACAACATATCAGATTGTGAAGTGCTTGCAGCA
upper sequence: Vv09s0002g03550.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G21540.2 (Glycine max), 3'ss of exon 7
-----tagtctgatgattttgtatggatcaaatgatgata-gcattgcatgatggacaaggttgacctataatgggcctgactttgggctgatttggataatgcagGAGAGATGATTGTTGGGCCTACAAAAACGCTGTTTATGGACGAGATATCAACTGGGCTGGACAGCTCTACTACGTTTCAGATTGTGAAGTGCTTGCAGCA
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acgtataaccaacttagattatgacaatccaaggatcaaatgcataattatccaaattatattgatttcttacaa---cgacatggttttgattt---ttatacagGAGAGATGATTGTAGGGCCCACAAAAACACTATTCATGGATGAAATATCAACGGGTCTTGATAGCTCAACAACATATCAGATTGTGAAGTGCTTGCAGCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atggacaaggttgacctataatgggcctgactttgggctgatttggataatgcagGAGAGATGATTGTTGGGCCTACAAAAACGCTGTTTATGGACGAGATATCAACTGGGCTGGACAGCTCTACTACGTTTCAGATTGTGAAGTGCTTGCAGCA
tataat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tagtctgatgattttgtatggatcaaatgatgatagcattgcatgatggacaaggttgacctataatgggcctgactttgggctgatttggataatgcagGAGAGATGATTGTTGGGCCTACAAAAACGCTGTTTATGGACGAGATATCAACTGGGCTGGACAGCTCTACTACGTTTCAGATTGTGAAGTGCTTGCAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC