1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gatgcatcatgaggatgggatgataagtttgtagggcttgtatgcttcttcctttcacattttttggtatttatacagaattttttcttgggttttacagGGTATGTGGATTGGACTGATGGGTGGATTGATAATGCAAACACTTGCACTTATCTATATCACATGCAGAACTGATTGGAGTGAGCAG
species | Vitis vinifera |
transcript | Vv08s0056g01000.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAGTTCCATTGGGAGTTTTGCTTGCTTATGCATTTGATCTTTCTGTTANG GGTATGTGGATTGGACTGATGGGTGGATTGATAATGCAAACACTTGCACTTEST: gi|77584168|gb|DV221128.1|DV221128
genomic: GAGTTCCATTGGGAGTTTTGCTTGCTTATGCATTTGATCTTTCTGTTAGGgtaagaagcc ... ggttttacagGGTATGTGGATTGGACTGATGGGTGGATTGATAATGCAAACACTTGCACTT
EST: GAGTTCCATTGGGAGTTTTGCTTGCTTATGCATTTGATCTTTCTGTTAGG GGTATGTGGATTGGACTGATGGGTGGATTGATAATGCAAACACTTGCACTT
genomic: GAGTTCCATTGGGAGTTTTGCTTGCTTATGCATTTGATCTTTCTGTTAGGgtaagaagcc ... ggttttacagGGTATGTGGATTGGACTGATGGGTGGATTGATAATGCAAACACTTGCACTT
ttcttcctttcacattttttggtatttatacagaattttttcttgggttttacagGGTATGTGGATTGGACTGATGGGTGGATTGATAATGCAAACACTTGCACTTATCTATATCACATGCAGAACTGATTGGAGTGAGCAG
attttttggtatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgcatcatgaggatgggatgataagtttgtagggcttgtatgcttcttcctttcacattttttggtatttatacagaattttttcttgggttttacagGGTATGTGGATTGGACTGATGGGTGGATTGATAATGCAAACACTTGCACTTATCTATATCACATGCAGAACTGATTGGAGTGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - catcatg
- - - - - - ggatggg
- - - - - - - - - - - - - - - - -gggcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atacaga