Sequence
atgc intronic sequence ATGC exonic sequence...ttcaagtcccaatggggacaaaagtttacctataaaataataatagtaataattttgtaggattttgttcttaaactgaattgtcttggtgcatttccagGTTCTTTTGGGACTGTTCATCGTGCTGATTGGAATGGATCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g03910.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os09g39320.1 (Oryza sativa), 3'ss of exon 7
----------------------------------------------------------------------------------ttcaagtcccaatggggacaaaagtttaccta-taaaataataatagtaataattttgtaggattttgttct-taaactgaattgtcttggtgcatttccagGTTCTTTTGGGACTGTTCATCGTGCTGATTGGAATGGATCG
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gtacatgcaaataaaaattgaaatttcaggaatttctatcccattgccaaataaaagagcattttctatagcaatcttagcattttagtcatacttgtgttatg-gttgacttaacataattgcatgtatcttgactactaaatgtacaactttgtgatgttcatagacttactttccttacagGTTCATTTGGAACAGTTCATCGTGCTGACTGGAATGGATCG
upper sequence: Vv08s0007g03910.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G059671_T01 (Zea mays), 3'ss of exon 5
ttcaagtcccaatggggacaaaagtttacctataaaataataatagtaata-attttgtaggattttgttcttaaactgaattgtcttggtgc-----atttccagGTTCTTTTGGGACTGTTCATCGTGCTGATTGGAATGGATCG
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----agacctgctagggc--atgccttgaaaacaagacaattataaagccatattttggaaatttaaatgttttgtctacattatactaatgaggaaaaattccagGTTCTTTTGGTACTGTGCACCGTGCGGATTGGAATGGTTCG
upper sequence: Vv08s0007g03910.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA10G07610.1 (Glycine max), 3'ss of exon 8
---ttcaagtcccaatggggacaaaagtttacctataaaataataatagtaataattttgtaggattttgttcttaaactgaat-tgtcttggtgcatttccagGTTCTTTTGGGACTGTTCATCGTGCTGATTGGAATGGATCG
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gtaattaatttttagtaacataacttgctt-cttctagtggcatggtctgtgtaatta-gtatcagta-gtcattaaattgaaagtggcctgttgtatttc-agGTTCTTTTGGAACTGTACATCGTGCTGAGTGGAATGGCTCG
upper sequence: Vv08s0007g03910.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA13G21480.1 (Glycine max), 3'ss of exon 6
---ttcaagtcccaatggggacaaaagtttacctataaaataataatagtaataattttgtaggattttgttcttaaactgaat-tgtcttggtgcatttccagGTTCTTTTGGGACTGTTCATCGTGCTGATTGGAATGGATCG
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gtaattaatttttagtaacataacttgctt-cttctagtggcatgatctgtgtaatta-gtatcagta-gtcattaaattgaaagtgacctgtggtatttc-agGTTCTTTTGGAACTGTACATCGTGCTGAGTGGAATGGCTCGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161707075|gb|FC055952.1|FC055952EST: TTTGGATATTCCATGGAGTGACCTTGTTTTAAAAGAGAGAATTGGAGCAG GTTCTTTTGGGACTGTTCATCGTGCTGATTGGAATGGATCG
genomic: TTTGGATATTCCATGGAGTGACCTTGTTTTAAAAGAGAGAATTGGAGCAGgtatatatat ... gcatttccagGTTCTTTTGGGACTGTTCATCGTGCTGATTGGAATGGATCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtaataattttgtaggattttgttcttaaactgaattgtcttggtgcatttccagGTTCTTTTGGGACTGTTCATCGTGCTGATTGGAATGGATCG
catttcc CT-rich tract
attttgttcttaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttcaagtcccaatggggacaaaagtttacctataaaataataatagtaataattttgtaggattttgttcttaaactgaattgtcttggtgcatttccagGTTCTTTTGGGACTGTTCATCGTGCTGATTGGAATGGATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - -cccaatg
- - - - - - - -ggacaaa
- - - - - - - - - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtcttg