1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gcatttatatcactagatttatctttgtattgttttaagttatggtgccatgagttcaatgatgcttactttttctacccaaactatgattcctttgcagCCTGAGGATGAATTGGGTTTACCATCAGTGCCCCGAGCATCACTTCGTGATTAGGGAGGCTGCCAATGGGATGTAACTGAAACACGCAGAAATCTATTTT
species | Vitis vinifera |
transcript | Vv08s0007g02300.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAGCACCAACTGGACATGGTGCAGTTCCACCCAGCAGACAAAATGCCCGG CCTGAGGATGAATTGGGTTTACCATCAGTGCCCCGAGCATCACTTCGTGATEST: gi|33404120|gb|CF209747.1|CF209747
genomic: CAGCACCAACTGGACATGGTGCAGTTCCACCCAGCAGACAAAATGCCCGGgtaatttttg ... tcctttgcagCCTGAGGATGAATTGGGTTTACCATCAGTGCCCCGAGCATCACTTCGTGAT
EST: CAGCACCAACTGGACATGGTGCAGTTCCACCCAGCAGACAAAATGCCCGG CCTGAGGATGAATTGGGTTTACCATCAGTGCCCCGAGCATCACTTCGTGATEST: gi|110690195|gb|EE067084.1|EE067084
genomic: CAGCACCAACTGGACATGGTGCAGTTCCACCCAGCAGACAAAATGCCCGGgtaatttttg ... tcctttgcagCCTGAGGATGAATTGGGTTTACCATCAGTGCCCCGAGCATCACTTCGTGAT
EST: CAGCACCAACTGGACATGGTGCAGTTCCACCCAGCAGACAAAATGCCCGG CCTGAGGATGAATTGGGTTTACCATCAGTGCCCCGAGCATCACTTCGTGAT
genomic: CAGCACCAACTGGACATGGTGCAGTTCCACCCAGCAGACAAAATGCCCGGgtaatttttg ... tcctttgcagCCTGAGGATGAATTGGGTTTACCATCAGTGCCCCGAGCATCACTTCGTGAT
tgccatgagttcaatgatgcttactttttctacccaaactatgattcctttgcagCCTGAGGATGAATTGGGTTTACCATCAGTGCCCCGAGCATCACTTCGTGATTAGGGAGGCTGCCAATGGGATGTAACTGAAACACGCAGAAATCTATTTT
tgcttac putative branch site (score: 2)
ttcctttgc putative PPT
ttacttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatttatatcactagatttatctttgtattgttttaagttatggtgccatgagttcaatgatgcttactttttctacccaaactatgattcctttgcagCCTGAGGATGAATTGGGTTTACCATCAGTGCCCCGAGCATCACTTCGTGATTAGGGAGGCTGCCAATGGGATGTAACTGAAACACGCAGAAATCTATTTT
- - - - - - - - - - - - - - - - - - - - -atggtgc
- - - - - - - - - - - - - - - - - - - - - - - - catgagt