Sequence
atgc intronic sequence ATGC exonic sequence...ttcattacatatgctttaatcgactattgcctttaccatgagaagtttgagtgtattcagttgatctggagttctaagtatgtttttctgttcttctcagGTAACTTTTGTTGTTACCCACTTCAACGACCCAAGGATATCTAGTGCAGATCTGAGGGATCTTCTTCTCCAATCTATTTCAGTCCTGGTACAATACAAGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g01490.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA06G15090.1 (Glycine max), 3'ss of exon 5
ttcattacatatgctttaatcgactattgcctttaccatgagaagttt-gagtgtattcagttgatctggagttctaagt-atgtttttctgttcttctca---gGTAACTTTTGTTGTTACCCACTTCAACGACCCAAGGATATCTAGTGCAGATCTGAGGGATCTTCTTCTCCAATCTATTTCAGTCCTGGTACAATACAAGG
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----gaacctaagcttttaatg-cagctactcccaaattgataattttcaaacacagcgtttctcccattggttctaaattatgctttgatatctttttcaccagGTCACCTTTGTAGTTACCCATTTCAATGATCCAAGAATATCAAGTGCAGATCTTAGGGATCTTCTTCTTCAGTCTATATCTGTCCTGGTGCAATACAAGG
upper sequence: Vv07s0031g01490.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA04G39780.1 (Glycine max), 3'ss of exon 5
ttcatta-catatgctttaatcgactattgcctttaccatgagaagtttgagtgtattcagttgatctggagttctaagt-atgtttttctgttcttctca---gGTAACTTTTGTTGTTACCCACTTCAACGACCCAAGGATATCTAGTGCAGATCTGAGGGATCTTCTTCTCCAATCTATTTCAGTCCTGGTACAATACAAGG
|| | | || ||||| | | | ||| | || |||| | | | || ||||||| | ||| ||| | | || ||| ||| || ||||| ||||| || ||||| || || || ||||| ||||||||||| |||||||||||||| || ||||| || |||||||| |||||| ||
---atgaacctaagcttttaatg--cagctacttcaaaatagatcgtttccaaacactgtttctctcattggttctaaattatgctttgatatctttttcactagGTCACCTTTGTAGTTACACATTTCAATGATCCGAGAATATCAAGTGCAGATCTTAGGGATCTTCTTCTTCAGTCTATATCTGTCCTGGTGCAATACCGGG
upper sequence: Vv07s0031g01490.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT2G22010.2 (Arabidopsis thaliana), 3'ss of exon 6
-------------ttcattacatatgctttaatcgactattgcctttac-catgagaagtttgagtgtattcagttgatctggagttctaagtatgtttttctgttcttctcagGTAACTTTTGTTGTTACCCACTTCAACGACCCAAGGATATCTAGTGCAGATCTGAGGGATCTTCTTCTCCAATCTATTTCAGTCCTGGTACAATACAAGG
| || ||| | |||| | | || || ||| | |||| | || || | | | ||| | | | | || || ||| ||| | ||||| || ||||| ||||||||||| |||||||||| | | ||||||| | ||||| |||||||| || || || ||||||||||| ||||| |
gtatgcctaaactcttatcacacaatctttt-ttgtctgttatttttcctcatggctgact---gttagttgattagctctaacatggtcattgcaaattcttgggtttc-cagATCACTTTCGTAGTTACACACTTCAACGATTCAAGGATATCGAATACAGATCTTAAAGATCTACTTCTCCAGTCAATATCCGTCCTGGTACAGTACAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttgagtgtattcagttgatctggagttctaagtatgtttttctgttcttctcagGTAACTTTTGTTGTTACCCACTTCAACGACCCAAGGATATCTAGTGCAGATCTGAGGGATCTTCTTCTCCAATCTATTTCAGTCCTGGTACAATACAAGG
agttgat putative branch site (score: 5)
tgtttttctgttcttc putative PPT
tatgttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttcattacatatgctttaatcgactattgcctttaccatgagaagtttgagtgtattcagttgatctggagttctaagtatgtttttctgttcttctcagGTAACTTTTGTTGTTACCCACTTCAACGACCCAAGGATATCTAGTGCAGATCTGAGGGATCTTCTTCTCCAATCTATTTCAGTCCTGGTACAATACAAGG
- - - -catatgc
- - - - - - - - - - - - - -tgccttt
- - - - - - - - - - - - - - - - - - catgaga
- - - - - - - - - - - - - - - - - - - - - - - -tgagtgt