1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaggttttgaactgatttcttggtatctttctccgcattcatctttgaagttatttatccattgatgtccttatgcgatcccattcttctacagAGAAAGTCAAGTTGACAGGCTAAAGACCCAAATATTTATCTTGAGCTGCACCCAAAGAAG
species | Vitis vinifera |
transcript | Vv07s0031g01480.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATGAAGCAAATGAAAATGGACTGGGTTCCATATATTCCTTTGGAGAACAA AGGAAGTCAAGTTGACAGGCTAAAGAACCAAATATTEST: gi|110715682|gb|EE094011.1|EE094011
genomic: ATGAAGCAAATGAAAATGGACTGGGTTCCATATATTCCTTTGGAGAACAGgtaggttttg ... tcttctacagAGAAAGTCAAGTTGACAGGCTAAAGACCCAAATATT
EST: ATGAAGCAAATGAAAATGGACTGGGTTCCATATATTCCTTTGGAGAACAG AGAAAGTCAAGTTGACAGGCTAAAGACCCAAATATTTATCTTGAGCTGCACEST: gi|30256159|gb|CB972002.1|CB972002
genomic: ATGAAGCAAATGAAAATGGACTGGGTTCCATATATTCCTTTGGAGAACAGgtaggttttg ... tcttctacagAGAAAGTCAAGTTGACAGGCTAAAGACCCAAATATTTATCTTGAGCTGCAC
EST: ATGAAGCAAATGAAAATGGACTGGGTTCCATATATTCCTTTGAAGAACAG AGAAAGTCAAGTTGACAGGCTAAAGACCCAAATATTTATCTTGAGCTGCACEST: gi|77585124|gb|DV221654.1|DV221654
genomic: ATGAAGCAAATGAAAATGGACTGGGTTCCATATATTCCTTTGGAGAACAGgtaggttttg ... tcttctacagAGAAAGTCAAGTTGACAGGCTAAAGACCCAAATATTTATCTTGAGCTGCAC
EST: ATGAAGCAAATGAAAATGGACTGGGTTCCATATATTCCTTTGGAGAACAG AGAAAGTCAAGTTGACAGGCTAAAGACCCAAATATTTATCTTGAGCTGCACEST: gi|351021609|gb|FQ430496.1|FQ430496
genomic: ATGAAGCAAATGAAAATGGACTGGGTTCCATATATTCCTTTGGAGAACAGgtaggttttg ... tcttctacagAGAAAGTCAAGTTGACAGGCTAAAGACCCAAATATTTATCTTGAGCTGCAC
EST: ATGAAGCAAATGAAAATGGACTGGGTTCCATATATTCCTTTGGAGAACAG AGAAAGTCAAGTTGACAGGCTAAAGACCCAAATATTTATCTTGAGCTGCAC
genomic: ATGAAGCAAATGAAAATGGACTGGGTTCCATATATTCCTTTGGAGAACAGgtaggttttg ... tcttctacagAGAAAGTCAAGTTGACAGGCTAAAGACCCAAATATTTATCTTGAGCTGCAC
catctttgaagttatttatccattgatgtccttatgcgatcccattcttctacagAGAAAGTCAAGTTGACAGGCTAAAGACCCAAATATTTATCTTGAGCTGCACCCAAAGAAG
cattgat putative branch site (score: 4)
tcccattcttctac putative PPT
ttgaagttatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggttttgaactgatttcttggtatctttctccgcattcatctttgaagttatttatccattgatgtccttatgcgatcccattcttctacagAGAAAGTCAAGTTGACAGGCTAAAGACCCAAATATTTATCTTGAGCTGCACCCAAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG