Sequence
atgc intronic sequence ATGC exonic sequencegttttatgctgatgcttgttgtaaaactgtcatggttttgaatgcctggtataaaagtgttatgctaattggtgatttaccatctgcagTTTTGCAAATAACTTGAATCTATGTGGTCCGGTTATTGGGAAGCCCTGCCCTGGGTCTCCTCCATTTTCTCCACCACCTCCATTTGTGCCACCATCTACA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g01410.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G115420_T01 (Zea mays), 3'ss of exon 6
gttttatgctgatgcttgttgtaaaactgtcatggttttgaatgcctggtataaaagtgttatgctaattggtgatttaccatctgcagTTTTGCAAATAACTTGAATCTATGTGGTCCGGTTATTGGGAAGCCCTGCCCTGGGTCTCCTCCATTTTCTCCACCACCTCCATTTGTGCCACCATCTACA
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gtcttttatttggacaattcactaatct----tggcctaaactgtatcatcagtgtgcatcataaatattacctgtttgtta----cagTTTTGCCAACAATCCAAATCTTTGTGGCCCTGGTACTTCGAAGCCCTGCCCTGGGGCTCCTCCCTTTTCCCCACCTCCTCCATTCAATCCTCCATCTCCC
upper sequence: Vv07s0031g01410.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM5G870959_T01 (Zea mays), 3'ss of exon 6
----------------------gttttatgctgatgcttgttgtaaaactgtcatggttttgaatgcctggtataaaagtgttatgctaattggtgattt--accatct-----gcagTTTTGCAAATAACTTGAATCTATGTGGTCCGGTTATTGGGAAGCCCTGCCCTGGGTCTCCTCCATTTTCTCCACCACCTCCATTTGTGCCACCATCTACA
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gtaatctctggatgaattttggatgcttagttgcatcttctgatgcagctctcctgccagttgaaaacaaaaacctgtgtcttatgatg-ttgacaactctgaccctttttgtaacagTTTTGCTAACAACCCAAATCTTTGCGGCCCTGGTACTACAAAGCCTTGTCCTGGGGCTCCTCCATTTTCTCCACCCCCTCCATACAATCCCCCAGCACCA
upper sequence: Vv07s0031g01410.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G150024_T03 (Zea mays), 3'ss of exon 6
gttttatgctgatgcttgttgtaaaactgtcatggttttgaatgcctggtataaaagtgttatgctaattggtgatttaccatctgcagTTTTGCAAATAACTTGAATCTATGTGGTCCGGTTATTGGGAAGCCCTGCCCTGGGTCTCCTCCATTTTCTCCACCACCTCCATTTGTGCCACCATCTACA
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gtcttttatc--tggaaaatccactgct-ccttagcctaaactgtatcttcagtgtgcatgataaatattacctgttttt--tttacagTTTTAACAATAATCCAAATCTTTGTGGCCCTGTTACTACGAAGCCCTGCCCTGGGGATCCTCCCTTTTCCCCACCGCCTCCATTCAATCCTCCGTCTCCTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161716121|gb|FC065843.1|FC065843EST: GCAGGACCTGTTCCAGACAATGGTTCATTTTCACTATTTACTCCCATAAG TTTTGCAAATAACTTGAATCTATGTGGTCCGGTTATTGGGAAGCCCTGCCC
genomic: GCAGGACCTGTTCCAGACAATGGTTCATTTTCACTATTTACTCCCATAAGgttttatgct ... ccatctgcagTTTTGCAAATAACTTGAATCTATGTGGTCCGGTTATTGGGAAGCCCTGCCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttttgaatgcctggtataaaagtgttatgctaattggtgatttaccatctgcagTTTTGCAAATAACTTGAATCTATGTGGTCCGGTTATTGGGAAGCCCTGCCCTGGGTCTCCTCCATTTTCTCCACCACCTCCATTTGTGCCACCATCTACA
tgctaat putative branch site (score: 2)
tataaaagtgttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttttatgctgatgcttgttgtaaaactgtcatggttttgaatgcctggtataaaagtgttatgctaattggtgatttaccatctgcagTTTTGCAAATAACTTGAATCTATGTGGTCCGGTTATTGGGAAGCCCTGCCCTGGGTCTCCTCCATTTTCTCCACCACCTCCATTTGTGCCACCATCTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC