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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattgtgatctgaattattatttattttttctttagttggatgtttttgtagaacataaacattgacacatatttcacagGCTGCTGTCGCTGTTCAAGCAGGTGTTTGTGTGGATATATTTGCTGTTACAAACGAGTATACGGATTTGGCATCCCTAAAATTTCTTAGTATTGAAAGTG

Basic information

species Vitis vinifera
transcript Vv06s0080g00510.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0080g00510.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os05g37120.2 (Oryza sativa), 3'ss of exon 6
gtaa-ttgtga-----tctgaattattatttattttttctttagttggatgtttttgtagaacataaacattgacacatatttc--acagGCTGCTGTCGCTGTTCAAGCAGGTGTTTGTGTGGATATATTTGCTGTTACAAACGAGTATACGGATTTGGCATCCCTAAAATTTCTTAGTATTGAAAGTG
||||  |  ||     |||| |     |   |||   | ||| | || |  | ||||    |  | ||| ||     | ||||   |||||| |||||||||||||||||||| || ||||| || ||||||||| | ||  |||| || || |||||||| ||  | || ||| | |||||||||||||
gtaagctccgaatgattctggagggaaagaaattacatttttggctgaacatgtttggcatatgtcaaccttattgaaaatttgaaacagGCAGCTGTCGCTGTTCAAGCAGGAGTATGTGTAGACATATTTGCTATAACCGACGAATACACCGATTTGGCTTCGTTGAAGTTTTTAAGTATTGAAAGTG

upper sequence: Vv06s0080g00510.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os04g33690.1 (Oryza sativa), 3'ss of exon 6
gtaattgtga-tctgaattattatttattttttctttagttggatgtttttgtagaacataaacattgacacatatttcacagGCTGCTGTCGCTGTTCAAGCAGGTGTTTGTGTGGATATATTTGCTGTTACAAACGAGTATACGGATTTGGCATCCCTAAAATTTCTTAGTATTGAAAGTG
      || | |||   | ||| ||  |   |   |||   | || || |   |||| |||  |  | |     || ||||||||||||   ||||||||||||||||| ||||||||  | |||||  ||||||| || || || ||| |  | ||| | ||| |||||||| |||| || |
------gtaagtctctgtaatttttgctcaataaattacaagaatattct---agaatatatcc--taattggcatatcacagGCTGCTAGTGCTGTTCAAGCAGGTGTATGTGTGGACCTTTTTGCAATTACAAATGAATACACAGATCTTTCTTCCTTGAAAGTTCTTAGTGTTGAGAGCG

upper sequence: Vv06s0080g00510.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA11G18930.1 (Glycine max), 3'ss of exon 6
gtaattgtgatctgaattattatttattttttctttagttggatgtttttgtagaacataaacattgacacatatttcacagGCTGCTGTCGCTGTTCAAGCAGGTGTTTGTGTGGATATATTTGCTGTTACAAACGAGTATACGGATTTGGCATCCCTAAAATTTCTTAGTATTGAAAGTG
      || || | | ||||   ||||| || ||   ||      |||    | |    ||  |||||||  | | | |||||||||||| ||||||||||||||||| ||||| || |||||||| || ||||| ||||| || ||||||||||||||||||||||| |||||||||||||
------gt-atttaacttatg--ttattgttactcccgtgtcccatttcctaaaagtggaagaattgacatttgtattacagGCTGCTGTTGCTGTTCAAGCAGGTGTATGTGTTGACATATTTGCCGTAACAAATGAGTACACTGATTTGGCATCCCTAAAATTTCTGAGTATTGAAAGTG

upper sequence: Vv06s0080g00510.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA12G09540.1 (Glycine max), 3'ss of exon 6
gtaattgtgatctgaattattatttattttttctttagttggatgtttttgtagaacataaacattgacacatatttcacagGCTGCTGTCGCTGTTCAAGCAGGTGTTTGTGTGGATATATTTGCTGTTACAAACGAGTATACGGATTTGGCATCCCTAAAATTTCTTAGTATTGAAAGTG
      || ||   | ||||   ||||| || ||    |      |||      |    ||  |||||||  | | | |||||||||||| ||||||||||||||||| ||||| || ||||| || || ||||| ||||| || ||||||||||||||||||||||| |||||||||||||
------gt-attcaacttatg--ttattgttactcccatctcccatttcctagaagtggaagaattgacatgtgtattacagGCTGCTGTTGCTGTTCAAGCAGGTGTATGTGTTGACATATTCGCCGTAACAAATGAGTACACTGATTTGGCATCCCTAAAATTTCTGAGTATTGAAAGTG

upper sequence: Vv06s0080g00510.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: PP1S29_149V6.1 (Physcomitrella patens), 3'ss of exon 6
-------gtaattgtg--atctgaattat----tatttattttttctttagttggatgtttttgtagaacataaacattgacacatatt-----tcacagGCTGCTGTCGCTGTTCAAGCAGGTGTTTGTGTGGATATATTTGCTGTTACAAACGAGTATACGGATTTGGCATCCCTAAAATTTCTTAGTATTGAAAGTG
        |||||     |  || || ||     | |   || |  |    |    ||  ||  |  | ||| || |  || |  | ||        ||||| ||    || || | |||||||||||| |||||| | |||||||| |||||||| || || |||||||| || || || |   | |  || ||||| |
ggaatacttaatttcagaaagtggatgatgcggcagtggattgtagtgagatccattgagttgctttagcattaaaagggagagctgttgttcgcttcagGCCGCACAAGCAGTGCTAGCAGGTGTTTGCGTGGATCTGTTTGCTGTGACAAACGAATACACTGATTTGGCGTCACTCAAGTACTTAAACATAGAAAGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttctttagttggatgtttttgtagaacataaacattgacacatatttcacagGCTGCTGTCGCTGTTCAAGCAGGTGTTTGTGTGGATATATTTGCTGTTACAAACGAGTATACGGATTTGGCATCCCTAAAATTTCTTAGTATTGAAAGTG
                                   cattgac  putative branch site (score: 3)
                              ataaacatt  TA-rich tract