Sequence
atgc intronic sequence ATGC exonic sequence...ttattatgatgtgtacttgaatcttcattaatgaattttctaaggtggccctagctgtatgtgaatgcaacttatttggctttcgtttttgttctctcagGTATGTTTCTTCAGACAGTTCGTTAGGTCCGTTCCAAAAGTTGACTACTTCACCTTAAGACATGGATTTATCATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g03100.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA13G40300.1 (Glycine max), 3'ss of exon 6
ttattatgatgtgtacttgaatcttcattaatgaattttctaaggtggccctagctgtatgtgaatgcaacttatttggctttcgtttttgttctctcagGTATGTTTCTTCAGACAGTTCGTTAGGTCCGTTCCAAAAGTTGACTACTTCACCTTAAGACATGGATTTATCATG
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agagtttgtgccacttgttaaattttgtttattaattgaatagcctcttgtcacacctattcaactttttttttctttcttttccttattgctgtaacagGTTTGTTTCTTCAGACAGTTTGTACGGTCAGTTCCTAAAGTAGATTACTTGACCTTGAGACATGGATTTATGATG
upper sequence: Vv06s0004g03100.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA11G15920.1 (Glycine max), 3'ss of exon 6
----ttatt-atgatgtgtacttgaatc-ttcattaatgaattttctaaggtggccctagctgtatgtgaatgcaacttatttggctttcgtttttgttctctcagGTATGTTTCTTCAGACAGTTCGTTAGGTCCGTTCCAAAAGTTGACTACTTCACCTTAAGACATGGATTTATCATG
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atacttattcaaagtagctgcctaatttgtctattattgattcttgttaa------ttaccaatttgctgagctaagtggtatcattctcttacgcctgagtgcagGTTTGTTTCTTTAGGCAATTTGTGCGGTCAGTTCCTAAAGTGGATTACTTGACCTTAAGACATGGATTTATCATG
upper sequence: Vv06s0004g03100.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA12G29310.1 (Glycine max), 3'ss of exon 6
ttattatgatgtgtacttgaatcttcattaatga-attttctaaggtggccctagctgtatgtgaatgca--acttatttggctttcgttt-ttgttctctcagGTATGTTTCTTCAGACAGTTCGTTAGGTCCGTTCCAAAAGTTGACTACTTCACCTTAAGACATGGATTTATCATG
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-gtttctaatttccgc---aagttttataaatgagatttttttttttcattttttaaatataagaatgtgtcgcatattacatttttgcttattgttgtaacagGTTTGTTTCTTCAGACAGTTTGTACAGTCAGTTCCTAAAGTAGATTACTTGACATTGAGACATGGATTTATGATG
upper sequence: Vv06s0004g03100.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA12G07530.1 (Glycine max), 3'ss of exon 6
-ttattatgatgtgtacttgaatcttcattaatgaattttctaaggtggccctagctgtatgtgaatgcaacttatttggctttcgttt-ttgttctctcagGTATGTTTCTTCAGACAGTTCGTTAGGTCCGTTCCAAAAGTTGACTACTTCACCTTAAGACATGGATTTATCATG
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gatatacttattcaaagtagttgcttaatttgtctattattcattcttgt--taagtttttgctgagctaagttgtatcgttcttttacgccatgattgcagGTTTGTTTCTTTAGGCAATTTGTGCGGTCAGTTCCAAATGTGGATTACTTGACCTTAAGACATGGATTTATAATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggccctagctgtatgtgaatgcaacttatttggctttcgtttttgttctctcagGTATGTTTCTTCAGACAGTTCGTTAGGTCCGTTCCAAAAGTTGACTACTTCACCTTAAGACATGGATTTATCATG
ctttcgtttttgttct CT-rich tract
aacttattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttattatgatgtgtacttgaatcttcattaatgaattttctaaggtggccctagctgtatgtgaatgcaacttatttggctttcgtttttgttctctcagGTATGTTTCTTCAGACAGTTCGTTAGGTCCGTTCCAAAAGTTGACTACTTCACCTTAAGACATGGATTTATCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - tgatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - ctgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatgca