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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttctcacttctcaaaatcagacctcatgcatagcttaaaaagacatgaaaatcatatcgacgaagacatttaagttgaatggatgattttgcagGTGGAGTAGAATCCGGGCAAGGTCTCAACCGAGTGGTTAAATGTGATAGAATGGCAGCCCCACACGTTGTACATTCATGACATTGCACACATTCCATTTG

Basic information

species Vitis vinifera
transcript Vv05s0077g01290.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18458263|gb|BM436541.1|BM436541
EST:     AACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCCGTGATAGCCTC                         GTGGAGTAGAATCCGGGCAAGGTCTCAACCGAGTGGTTAAATGTGATAGAA
genomic: AACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCCGTGATAGCCTCgtgagttctc ... gattttgcagGTGGAGTAGAATCCGGGCAAGGTCTCAACCGAGTGGTTAAATGTGATAGAA
EST: gi|110700463|gb|EE078531.1|EE078531
EST:     AACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCCATGATAGCCTC                         GTGGAGTAGAATCCGGGCAAGGTCTCAACCGAGTGGTTTAATGTGATAGAA
genomic: AACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCCGTGATAGCCTCgtgagttctc ... gattttgcagGTGGAGTAGAATCCGGGCAAGGTCTCAACCGAGTGGTTAAATGTGATAGAA
EST: gi|110400864|gb|EC967446.1|EC967446
EST:     AACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCCGTGATAGCCTC                         GTGGAGTAGAATCCGGGCAAGGTCTCAACCGAGTGGTTAAATGTGATAGAA
genomic: AACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCCGTGATAGCCTCgtgagttctc ... gattttgcagGTGGAGTAGAATCCGGGCAAGGTCTCAACCGAGTGGTTAAATGTGATAGAA
EST: gi|110381493|gb|EC934610.1|EC934610
EST:     AACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCCGTGATAGCCTC                         GTGGAGTAGAATCCGGGCAAGGTCTCAACCGAGTGGTTAAATGTGATAGAA
genomic: AACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCCGTGATAGCCTCgtgagttctc ... gattttgcagGTGGAGTAGAATCCGGGCAAGGTCTCAACCGAGTGGTTAAATGTGATAGAA
EST: gi|110373187|gb|EC937404.1|EC937404
EST:     AACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCCGTGATAGCCTC                         GTGGAGTAGAATCCGGGCAAGGTCTCAACCGAGTGGTTAAATGTGATAGAA
genomic: AACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCCGTGATAGCCTCgtgagttctc ... gattttgcagGTGGAGTAGAATCCGGGCAAGGTCTCAACCGAGTGGTTAAATGTGATAGAA
EST: gi|110397101|gb|EC962822.1|EC962822
EST:     AACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCCGTGATAGCCTC                         GTGGAGTAGAATCCGGGCAAGGTCTCAACCGAGTGGTTTAATGTGATAGAA
genomic: AACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCCGTGATAGCCTCgtgagttctc ... gattttgcagGTGGAGTAGAATCCGGGCAAGGTCTCAACCGAGTGGTTAAATGTGATAGAA
EST: gi|77579368|gb|DV218513.1|DV218513
EST:     AACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCCGTGATAGCCTC                         GTGGAGTAGAATCCGGGCAAGGTCTCAACCGAGTGGTTAAATGTGATAGAA
genomic: AACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCCGTGATAGCCTCgtgagttctc ... gattttgcagGTGGAGTAGAATCCGGGCAAGGTCTCAACCGAGTGGTTAAATGTGATAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagacatgaaaatcatatcgacgaagacatttaagttgaatggatgattttgcagGTGGAGTAGAATCCGGGCAAGGTCTCAACCGAGTGGTTAAATGTGATAGAATGGCAGCCCCACACGTTGTACATTCATGACATTGCACACATTCCATTTG
        aaaatcatat  TA-rich tract