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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcttgctttactcctaggttgattatcttttaatttctttcaacttatttatcgtttgcatattgttgtaatgatagCTGCGGAGGATGAGGAGTTGGGTCCTAATGGCAAGAAACTCCGTCCTGGAATTTCTGCTAGTATCATTACAGAACTTACAGACTGTAATGCGGCACTTTC

Basic information

species Vitis vinifera
transcript Vv05s0049g01840.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110729437|gb|EE105388.1|EE105388
EST:     GTCAACAGCAACTGCAGTAAATGCTTCTGCTCTTAGCAACGGGAAAAGAG                         CTGCGGAGGATGAGGAGTTGGGTCCTAATGGCAAGAAACTCCGTCCTGGAA
genomic: GTCAACAGCAACTGCAGTAAATGCTTCTGCTCTTAGCAACGGGAAAAGAGgttcttgctt ... gtaatgatagCTGCGGAGGATGAGGAGTTGGGTCCTAATGGCAAGAAACTCCGTCCTGGAA
EST: gi|71858292|gb|DT007347.1|DT007347
EST:     GTCAACAGCAACTGCAGTAAATGCTTCTGCTCTTAGCAACGGGAAAAGAG                         CTGCGGAGGATGAGGAGTTGGG
genomic: GTCAACAGCAACTGCAGTAAATGCTTCTGCTCTTAGCAACGGGAAAAGAGgttcttgctt ... gtaatgatagCTGCGGAGGATGAGGAGTTGGG
EST: gi|110687481|gb|EE064937.1|EE064937
EST:     GTCAACAGCAACTGCAGTAAATGCTTCTGCTCTTAGCAACGGGAAAAGAG                         CTGCGGAGGATGAGGAGTTGGGTCCTAATGGCAAGAAACTCCGTCCTGGAA
genomic: GTCAACAGCAACTGCAGTAAATGCTTCTGCTCTTAGCAACGGGAAAAGAGgttcttgctt ... gtaatgatagCTGCGGAGGATGAGGAGTTGGGTCCTAATGGCAAGAAACTCCGTCCTGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatcttttaatttctttcaacttatttatcgtttgcatattgttgtaatgatagCTGCGGAGGATGAGGAGTTGGGTCCTAATGGCAAGAAACTCCGTCCTGGAATTTCTGCTAGTATCATTACAGAACTTACAGACTGTAATGCGGCACTTTC
     ttttaat  putative branch site (score: 3)
     ttttaatttctttcaa  TA-rich tract