1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagccagtggaacaaatcataaatatgcttttaagagtcctactgttgtatttgcagtgaattgacatgttttttgttatcttcgattacaccttggaaaacatccagTAAAACCACGAAAAGGGGATGCTCTTCTTTTCTTCAGCCTTCACCCAACTGCCATTCCTGATCCCATGAGTCTCCATGGAGGGTGCCCTGTGATTGAAGG
species | Vitis vinifera |
transcript | Vv05s0020g02220.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACTTCCAACAAATGATGATTTATCCGAGTGTGCAAGAAAAGGAATTGCAG TAAAACCACGAAAAGGGGATGCTCTTCTTTTCTTCAGCCTTCACCCAACTGEST: gi|30304262|gb|CB981056.1|CB981056
genomic: ACTTCCAACAAATGATGATTTATCCGAGTGTGCAAGAAAAGGAATTGCAGgtgagccagt ... aaacatccagTAAAACCACGAAAAGGGGATGCTCTTCTTTTCTTCAGCCTTCACCCAACTG
EST: ATGATTTATCCGAGTGTGCAAGAAAAGGAATTGCAG TAAAACCACGGATCNGGGATGCTCTTCTTTTCTTCAGCCTTCACCCAACTGEST: gi|110692448|gb|EE071702.1|EE071702
genomic: ATGATTTATCCGAGTGTGCAAGAAAAGGAATTGCAGgtgagccagt ... aaacatccagTAAAACCACGAAAAGGGGATGCTCTTCTTTTCTTCAGCCTTCACCCAACTG
EST: ACTTCCAACAAATGATGATTTATCCGAGTGTGCAAGAAAAGGAATTGCAG TAAAACCACGAAAAGGGGATGCTCTTCTTTTCTTCAGCCTTCACCCAACTGEST: gi|110703913|gb|EE081266.1|EE081266
genomic: ACTTCCAACAAATGATGATTTATCCGAGTGTGCAAGAAAAGGAATTGCAGgtgagccagt ... aaacatccagTAAAACCACGAAAAGGGGATGCTCTTCTTTTCTTCAGCCTTCACCCAACTG
EST: ACTTCCAACAAATGATGATTTATCCGAGTGTGCAAGAAAAGGAATTGCAG TAAAACCACGAAAAGGGGATGCTCTTCTTTTCTTCAGCCTTCACCCAACTGEST: gi|110368369|gb|EC932343.1|EC932343
genomic: ACTTCCAACAAATGATGATTTATCCGAGTGTGCAAGAAAAGGAATTGCAGgtgagccagt ... aaacatccagTAAAACCACGAAAAGGGGATGCTCTTCTTTTCTTCAGCCTTCACCCAACTG
EST: ACTTCCAACAAATGATGATTTATCCGAGTGTGCAAGAAAAGGAATTGCAG TAAAACCACGAAAAGGGGATGCTCTTCTTTTCTTCAGCCTTCACCCAACTGEST: gi|30303659|gb|CB980453.1|CB980453
genomic: ACTTCCAACAAATGATGATTTATCCGAGTGTGCAAGAAAAGGAATTGCAGgtgagccagt ... aaacatccagTAAAACCACGAAAAGGGGATGCTCTTCTTTTCTTCAGCCTTCACCCAACTG
EST: ATGATTTATCCGAGTGTGCAAGAAAAGGAATTGCAG TAAAACCACGCAAAAGGGGATGCTCTTCTTTTCTTCAGCCTTCACCCAACT
genomic: ATGATTTATCCGAGTGTGCAAGAAAAGGAATTGCAGgtgagccagt ... aaacatccagTAAAACCACG-AAAAGGGGATGCTCTTCTTTTCTTCAGCCTTCACCCAACT
gcagtgaattgacatgttttttgttatcttcgattacaccttggaaaacatccagTAAAACCACGAAAAGGGGATGCTCTTCTTTTCTTCAGCCTTCACCCAACTGCCATTCCTGATCCCATGAGTCTCCATGGAGGGTGCCCTGTGATTGAAGG
aattgac putative branch site (score: 3)
atgttttttgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagccagtggaacaaatcataaatatgcttttaagagtcctactgttgtatttgcagtgaattgacatgttttttgttatcttcgattacaccttggaaaacatccagTAAAACCACGAAAAGGGGATGCTCTTCTTTTCTTCAGCCTTCACCCAACTGCCATTCCTGATCCCATGAGTCTCCATGGAGGGTGCCCTGTGATTGAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG