1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttaaccaagtttaataattggtgaaaagccaacttgcttgttgcccctgttaaggttattatgattcttatggtttttttttctcatctctgccatacagGAAAGTGATGTGAAGTGGGCATCTAGATGGGATACCTATCTTCTCATGAGTGATGACCAGATCCACTGGTTCTCAATTGTTAATTCTTTGATGATTGTTC
species | Vitis vinifera |
transcript | Vv04s0008g06640.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGTGGAAGTGAACCAGGAAATTTTATTCACATATGATGTTGAGTTCCAG GAAAGTGATGTGAAGTGGGCATCTAGATGGGATACCTATCTTCTCATGAGTEST: gi|71868110|gb|DT017165.1|DT017165
genomic: AAGTTGAAGTGAACCAGGAAATTTTATTCACATATGATGTTGAGTTCCAGgtaggctgtt ... tgccatacagGAAAGTGATGTGAAGTGGGCATCTAGATGGGATACCTATCTTCTCATGAGT
EST: AAGTTGAAGTGAACCAGGAAATTTTATTCACATATGATGTTGAGTTCCAG GAAAGTGATGTGAAGTGGGCATCTAGATGGGATACCTATCTTCTCATGAGTEST: gi|349833321|gb|FQ416699.1|FQ416699
genomic: AAGTTGAAGTGAACCAGGAAATTTTATTCACATATGATGTTGAGTTCCAGgtaggctgtt ... tgccatacagGAAAGTGATGTGAAGTGGGCATCTAGATGGGATACCTATCTTCTCATGAGT
EST: AAGTGGAAGTGAACCAGGAAATTTTATTCACATATGATGTTGAGTTCCAG GAAAGTGATGTGAAGTGGGCATCTAGATGGGATACCTATCTTCTCATGAGTEST: gi|33409925|gb|CF215552.1|CF215552
genomic: AAGTTGAAGTGAACCAGGAAATTTTATTCACATATGATGTTGAGTTCCAGgtaggctgtt ... tgccatacagGAAAGTGATGTGAAGTGGGCATCTAGATGGGATACCTATCTTCTCATGAGT
EST: AAGTTGAAGTGAACCAGGAAATTTTATTCACATATGATGTTGAGTTCCAG GAAAGTGATGTGAAGTGGGCATCTAGATGGGATACCTATCTTCTCATGAGTEST: gi|110699448|gb|EE076454.1|EE076454
genomic: AAGTTGAAGTGAACCAGGAAATTTTATTCACATATGATGTTGAGTTCCAGgtaggctgtt ... tgccatacagGAAAGTGATGTGAAGTGGGCATCTAGATGGGATACCTATCTTCTCATGAGT
EST: AAGTTGAAGTGAACCAGGAAATTTTATTCACATATGATGTTGAGTTCCAG GAAAGTGATGTGAAGTGGGCATCTAGATGGGATACCTATCTTCTCATGAGTEST: gi|110700412|gb|EE078424.1|EE078424
genomic: AAGTTGAAGTGAACCAGGAAATTTTATTCACATATGATGTTGAGTTCCAGgtaggctgtt ... tgccatacagGAAAGTGATGTGAAGTGGGCATCTAGATGGGATACCTATCTTCTCATGAGT
EST: AAGTTGAAGTGAACCAGGAAATTTTATTCACATATGATGTTGAGTTCCAG GAAAGTGATGTGAAGTGGGCATCTAGATGGGATACCTATCTTCTCATGAGTEST: gi|110699772|gb|EE077065.1|EE077065
genomic: AAGTTGAAGTGAACCAGGAAATTTTATTCACATATGATGTTGAGTTCCAGgtaggctgtt ... tgccatacagGAAAGTGATGTGAAGTGGGCATCTAGATGGGATACCTATCTTCTCATGAGT
EST: AAGTTGAAGTGAACCAGGAAATTTTATTCACATATGATGTTGAGTTCCAG GAAAGTGATGTGAAGTGGGCATCTAGATGGGATACCTATCTTCTCATGAGT
genomic: AAGTTGAAGTGAACCAGGAAATTTTATTCACATATGATGTTGAGTTCCAGgtaggctgtt ... tgccatacagGAAAGTGATGTGAAGTGGGCATCTAGATGGGATACCTATCTTCTCATGAGT
cctgttaaggttattatgattcttatggtttttttttctcatctctgccatacagGAAAGTGATGTGAAGTGGGCATCTAGATGGGATACCTATCTTCTCATGAGTGATGACCAGATCCACTGGTTCTCAATTGTTAATTCTTTGATGATTGTTC
ttcttatggttttttt CT-rich tract
ttattatgattcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaaccaagtttaataattggtgaaaagccaacttgcttgttgcccctgttaaggttattatgattcttatggtttttttttctcatctctgccatacagGAAAGTGATGTGAAGTGGGCATCTAGATGGGATACCTATCTTCTCATGAGTGATGACCAGATCCACTGGTTCTCAATTGTTAATTCTTTGATGATTGTTC
-taaccaa
- - - - - - - - - - - - -aagccaa
- - - - - - - - - - - - - - - - cttgctt
- - - - - - - - - - - - - - - - - - - - ttgcccc