1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tggatgaattatgagttcttttttttttttaatatatatatgtaattttttaatcccaattgtgaaatgatttcatatcaatggaagtggtacttttcagGGTCTCAATCTGCATATTTCTGAAATTGAGAAACTCTGCAAAGAGTTCCCTTCAACGGTTGTATTGCTTGACCATTTGGCTTTCTGCAAACCACCAAC
species | Vitis vinifera |
transcript | Vv01s0146g00120.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCTCAAAAGCGGGGGAGCTTGGAGTGCCAGTGGCTTTCATGTGTATGAAG GGTCTCAATCTGCATATTTCTGAAATTGAGAAACTCTGCAAAGAGTTCCCTEST: gi|33407684|gb|CF213311.1|CF213311
genomic: TCTCAAAAGCAGGGGAGCTTGGAGTGCCAGTGGCTTTCATGTGTATGAAGgtttttcatt ... tacttttcagGGTCTCAATCTGCATATTTCTGAAATTGAGAAACTCTGCAAAGAGTTCCCT
EST: TCTCAAAAGCAGGGGAGCTTGGAGTGCCAGTGGCTTTCATGTGTATGAAG GGTCTCAATCTGCATATTTCTGAAATTGAGAAACTCTGCAAAGAGTTCCCTEST: gi|351056524|gb|FQ455176.1|FQ455176
genomic: TCTCAAAAGCAGGGGAGCTTGGAGTGCCAGTGGCTTTCATGTGTATGAAGgtttttcatt ... tacttttcagGGTCTCAATCTGCATATTTCTGAAATTGAGAAACTCTGCAAAGAGTTCCCT
EST: TCTCAAAAGCAGGGGAGCTTGGAGTGCCAGTGGCTTTCATGTGTATGAAG GGTCTCAATCTGCATATTTCTGAAATTGAGAAACTCTGCAAAGAGTTCCCTEST: gi|110382591|gb|EC946898.1|EC946898
genomic: TCTCAAAAGCAGGGGAGCTTGGAGTGCCAGTGGCTTTCATGTGTATGAAGgtttttcatt ... tacttttcagGGTCTCAATCTGCATATTTCTGAAATTGAGAAACTCTGCAAAGAGTTCCCT
EST: TCTCAAAAGCAGGGGAGCTTGGAGTGCCAGTGGCTTTCATGTGTATGAAG GGTCTCAATCTGCATATTTCTGAAATTGAGAAACTCTGCAAAGAGTTCCCTEST: gi|110724885|gb|EE101102.1|EE101102
genomic: TCTCAAAAGCAGGGGAGCTTGGAGTGCCAGTGGCTTTCATGTGTATGAAGgtttttcatt ... tacttttcagGGTCTCAATCTGCATATTTCTGAAATTGAGAAACTCTGCAAAGAGTTCCCT
EST: TCTCAAAAGCAGGGGAGCTTGGAGTGCCAGTGGCTTTCATGTGTATGAAG GGTCTCAATCTGCATATTTCTGAAATTGAGAAACTCTGCAAAGAGTTCCCTEST: gi|351032774|gb|FQ462488.1|FQ462488
genomic: TCTCAAAAGCAGGGGAGCTTGGAGTGCCAGTGGCTTTCATGTGTATGAAGgtttttcatt ... tacttttcagGGTCTCAATCTGCATATTTCTGAAATTGAGAAACTCTGCAAAGAGTTCCCT
EST: TCTCAAAAGCAGGGGAGCTTGGAGTGCCAGTGGCTTTCATGTGTATGAAG GGTCTCAATCTGCATATTTCTGGAATTGAAAAACTCEST: gi|110367255|gb|EC931182.1|EC931182
genomic: TCTCAAAAGCAGGGGAGCTTGGAGTGCCAGTGGCTTTCATGTGTATGAAGgtttttcatt ... tacttttcagGGTCTCAATCTGCATATTTCTGAAATTGAGAAACTC
EST: TCTCAAAAGCAGGGGAGCTTGGAGTGCCAGTGGCTTTCATGTGTATGAAG GGTCTCAATCTGCATATTTCTGAAATTGAGAAACTCTGCAAAGAGTTCCCT
genomic: TCTCAAAAGCAGGGGAGCTTGGAGTGCCAGTGGCTTTCATGTGTATGAAGgtttttcatt ... tacttttcagGGTCTCAATCTGCATATTTCTGAAATTGAGAAACTCTGCAAAGAGTTCCCT
ttttttaatcccaattgtgaaatgatttcatatcaatggaagtggtacttttcagGGTCTCAATCTGCATATTTCTGAAATTGAGAAACTCTGCAAAGAGTTCCCTTCAACGGTTGTATTGCTTGACCATTTGGCTTTCTGCAAACCACCAAC
ttttaat putative branch site (score: 3)
tacttttc putative PPT
aaatgatttcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggatgaattatgagttcttttttttttttaatatatatatgtaattttttaatcccaattgtgaaatgatttcatatcaatggaagtggtacttttcagGGTCTCAATCTGCATATTTCTGAAATTGAGAAACTCTGCAAAGAGTTCCCTTCAACGGTTGTATTGCTTGACCATTTGGCTTTCTGCAAACCACCAAC
tggatga
- - - - - - - - - - - - - - - - - - - - - - - - - - atcccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatggaa