1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ggaatgattatgcttttgtaatttatgctttagaagttgttgtctgaatgttattaacttcaacttcttgtcctgtttaaacttgtcgattgctaactagGCTTCTCGTGATGGACCAACAAATAAAGTTCGGTCAAGGATGTCAATTGCATCAGCTATAATATTTGGGTCGGTTTTCTGGAGAATGGGACGATCTCAGA
species | Vitis vinifera |
transcript | Vv01s0011g04670.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGGTTTGGTGGAGGCAGTTCTGGTTGCTCCTTAGACGTGCATGGATGCAG GCTTCTCGTGATGGACCAACAAATAAAGTTCGGTCAAGGATGTCAATTGCAEST: gi|77580128|gb|DV218960.1|DV218960
genomic: GGGTTTGGTGGAGGCAGTTCTGGTTGCTCCTTAGACGTGCATGGATGCAGgttattcttt ... tgctaactagGCTTCTCGTGATGGACCAACAAATAAAGTTCGGTCAAGGATGTCAATTGCA
EST: GGGTTTGGTGGAGGCAGTTCTGGTTGCTCCTTAGACGTGCATGGATGCAG GCTTCTCGTGATGGACCAACAAATAAAGTTCGGTCAAGGATGTCAATTGCAEST: gi|34544781|gb|CF513013.1|CF513013
genomic: GGGTTTGGTGGAGGCAGTTCTGGTTGCTCCTTAGACGTGCATGGATGCAGgttattcttt ... tgctaactagGCTTCTCGTGATGGACCAACAAATAAAGTTCGGTCAAGGATGTCAATTGCA
EST: GGGTTTGGTGGAGGCAGTTCTGGTTGCTCCTTAGACGTGCATGGATGCAG GCTTCTCGTGATGGACCAACAAATAAAGTTCGGTCAAGGATGTCAATTGCA
genomic: GGGTTTGGTGGAGGCAGTTCTGGTTGCTCCTTAGACGTGCATGGATGCAGgttattcttt ... tgctaactagGCTTCTCGTGATGGACCAACAAATAAAGTTCGGTCAAGGATGTCAATTGCA
gaatgttattaacttcaacttcttgtcctgtttaaacttgtcgattgctaactagGCTTCTCGTGATGGACCAACAAATAAAGTTCGGTCAAGGATGTCAATTGCATCAGCTATAATATTTGGGTCGGTTTTCTGGAGAATGGGACGATCTCAGA
tattaac putative branch site (score: 1)
ttattaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaatgattatgcttttgtaatttatgctttagaagttgttgtctgaatgttattaacttcaacttcttgtcctgtttaaacttgtcgattgctaactagGCTTCTCGTGATGGACCAACAAATAAAGTTCGGTCAAGGATGTCAATTGCATCAGCTATAATATTTGGGTCGGTTTTCTGGAGAATGGGACGATCTCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
ggaatga
- - - - - - - - - - - - - - - - - - - - tgtctga