Sequence
atgc intronic sequence ATGC exonic sequence...atccatttgtatggattgataaaggtctgcttctaattattttggtcaatatgaagaaaaatatcacctaatagattccacttccacatgatttatgcagGAATGAATACCGGTATTCAAGATGCTCATAATCTTGCCTGGAAATTAGCTTCTCTTGTGAAGGGTATTGCACCATCTTCAATTCTTCACACTTATGATAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0010g02570.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA18G01240.1 (Glycine max), 3'ss of exon 6
atccatttgtatggattgataaaggtctgcttctaatta-----ttttggtcaatatgaagaaaaatatcacctaatagattccacttccacatgatttatgcagGAATGAATACCGGTATTCAAGATGCTCATAATCTTGCCTGGAAATTAGCTTCTCTTGTGAAGGGTATTGCACCATCTTCAATTCTTCACACTTATGATAC
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atcctccc---caaagtgacaagctttagcttcaaactcactatttttggttgatgt-agtttaaatgaagcaatttgacataaatattgatgtgatatg-gcagGAATGAATACTGGCATTCAGGATGCCCATAATCTTGCCTGGAAAATTGCTTCTGTGATTAAGGGTATTGCCCCAACTTCAGTGCTAAATACCTACGAAAT
upper sequence: Vv01s0010g02570.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA11G37280.1 (Glycine max), 3'ss of exon 6
-atccattt-gtatggattgataaaggtctgcttctaattattttggtcaatatgaagaaaaatatcacctaatagattccacttccacatgatttatgcagGAATGAATACCGGTATTCAAGATGCTCATAATCTTGCCTGGAAATTAGCTTCTCTTGTGAAGGGTATTGCACCATCTTCAATTCTTCACACTTATGATAC
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aatcctcctcagagtgacagctttaggttcaaactcactaatttttgttgatat-agtttaaatgaagcaatttgacataaatattgatacgatatg-gcagGAATGAATACTGGCATTCAGGACGCGCATAATCTTGCCTGGAAAATTGCTTCTGTGATTAAGGGTATTGCCCCAACTTCAATGCTAAATACCTACGAAAT
upper sequence: Vv01s0010g02570.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT1G24340.1 (Arabidopsis thaliana), 3'ss of exon 6
atccatttgtatggattgataaaggtctgcttctaattattttggtcaatatgaagaaaaatatcacctaata----gattccacttccacatgatttat-gcagGAATGAATACCGGTATTCAAGATGCTCATAATCTTGCCTGGAAATTAGCTTCTCTTGTGAAGGGTATTGCACCATCTTCAATTCTTCACACTTATGATAC
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--tgatccaaataaaagcagaaaaatat--tttgatttattaaagtttaaaacatcagcagtcttgaaaagtattttgatagcaaatt-acatgattttttgcagGAATGAACACTGGAATTCAGGATGCTCATAATCTTGCATGGAAAATAGCAGCTCTTGTTCAGGGTTCTGCAAACTCTTCAATTCTTAAAACTTATGAAACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718405|gb|FC065028.1|FC065028EST: ACTACTTGCTGGTGATGCTGCTCATCGTTTCCCTCCAGCTGGTGGTTTTG GAATGAATACCGGTATTCAAGATGCTCATAATCTTGCCTGGAAATTAGCTT
genomic: ACTACTTGCTGGTGATGCTGCTCATCGTTTCCCTCCAGCTGGTGGTTTTGgtgagtacct ... atttatgcagGAATGAATACCGGTATTCAAGATGCTCATAATCTTGCCTGGAAATTAGCTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcaatatgaagaaaaatatcacctaatagattccacttccacatgatttatgcagGAATGAATACCGGTATTCAAGATGCTCATAATCTTGCCTGGAAATTAGCTTCTCTTGTGAAGGGTATTGCACCATCTTCAATTCTTCACACTTATGATAC
acctaat putative branch site (score: 3)
atgaagaaaaatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atccatttgtatggattgataaaggtctgcttctaattattttggtcaatatgaagaaaaatatcacctaatagattccacttccacatgatttatgcagGAATGAATACCGGTATTCAAGATGCTCATAATCTTGCCTGGAAATTAGCTTCTCTTGTGAAGGGTATTGCACCATCTTCAATTCTTCACACTTATGATAC
- - - -tgtatgg
- - - - - - - - -gataaag
- - - - - - - - - - - - - ctgcttc
- - - - - - - - - - - - - - - - - - - - - - - -aatatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacctaa