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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcttctttggaagaacacctttgattaagttnnnnnnnnnnnnnnnnnncccaagtaaaaactgttttcattagactagCAACTTACTACTCG

Basic information

species Vitis vinifera
transcript Vv00s0598g00010.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0598g00010.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA20G34940.1 (Glycine max), 3'ss of exon 5
--------------------------------------------------------gtttcttctttggaagaacacctttgattaagttnnnnnnnnnnnnnnnnnncccaagtaaaaactgttttcatta--gac-tagCAACTTACTACTCG---------------------------------------------
                                                        |  |     ||         | |    ||                        || || || |  | || ||||||  ||| | ||  ||||   ||                                               
gtttgaccattgctattatacgaataagacctgtcatgcactgttgcttcttaattgcattgatgttaatgtcttgcttgcattttgacctactgtacagGTTTCTTCTCCCAGCAACACTTATTGTCATTAATGACATTGCTGCTTATATCTTTGGTTTCTTCTTTGGAAGAACCCCTTTGATTAAGTTATCTCCAAAG

upper sequence: Vv00s0598g00010.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA10G32660.2 (Glycine max), 3'ss of exon 5
-------------------------------------------------gtttcttctttg----gaag--aacacctt-tgattaagttnnnnnnnnnnnnnnnnnncccaagtaaaaactgttttcatta--gac-tagCAACTTACTACTCG---------------------------------------------
                                                 | |||||  |||    || |  ||   ||  |  ||                        || || || |  | || ||||||  ||  | ||  ||||   ||                                               
taatgtttgaccattgctattatacgaataagacttgtcctgcacttttgcttcttaattgcattgatgttaatgtctagtatttggacctattgtacagGTTTCTTCTCCCAGCAACACTTATTGTCATTAATGATATTGCTGCTTATATCTTTGGTTTCTTCTTTGGAAGAACCCCTTTGATCAAGTTATCTCCAAAG

upper sequence: Vv00s0598g00010.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT4G22340.3 (Arabidopsis thaliana), 3'ss of exon 4
---------------------------------gtttcttctttggaagaacacctttgattaagttnnnnnnnnnnnnnnnnnncccaagtaaaaactgttttcattagactagCAACT--TACTACTCG------------------------------------------------------------------------------------------------
                                 ||||  ||  ||    |   | | || |    |                    ||     |||| | | || | || ||| |   ||  | |   |                                                                                                  
gtagtcacctattccttttaacgcttcttacttgtttgctccgtgttt-agttcttgtgttattttctcttgtatcttggttatgacctgactaaaagtctatttactatactggttgctggtgcagGTTTCTTCTTCCTGCATCACTTATCGTCATCAATGACATATTTGCATATATCTGTGGTTTCTTCTTTGGAAGAACACCGTTGATCAAGTTATCACCAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaagttnnnnnnnnnnnnnnnnnncccaagtaaaaactgttttcattagactagCAACTTACTACTCG
                                        ttttcatt  CT-rich tract
                            aagtaaaaa  TA-rich tract