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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

taaactcttgacaatattgaaatatctatgagtttgtccaaatcttggttaacttgaaagagttgctcattgatgcattaattcatatgtagttggttaattatttggtagcctagttgggttatatgggaaaaaaaaggatgaccttctggcattcaaaatctgatgtttaaaaaacccaatcttctctgcagGAGGGAGAAGAGAACCTATTCCAACAGAAATTGAAGAAAGCTATTTGGGTCCCTCATCTTTTCCGGATTAGTGTTGCACAACATGAGTACATGAGTACAT

Basic information

species Vitis vinifera
transcript Vv00s0587g00010.t01
intron # 6
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatgaccttctggcattcaaaatctgatgtttaaaaaacccaatcttctctgcagGAGGGAGAAGAGAACCTATTCCAACAGAAATTGAAGAAAGCTATTTGGGTCCCTCATCTTTTCCGGATTAGTGTTGCACAACATGAGTACATGAGTACAT
                     atctgat  putative branch site (score: 4)
                                           tcttctctgc  putative PPT
                        tgatgtttaaaaaa  TA-rich tract