1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtttgatttagcagtggagtcctcaaaagaatttatctgaactcatacttggatccttgaatttgttacacagtccttatgtatgtagttttgatttgtttttatcagGGAGGGATGTTTGTTTTCAAAGGGAAGCAGTTGTTGTATGCATGGAAAGACGAAGGAACAGGTGATCATGCCCCTTTAGATGATATCTTTGATGCCTGTT
species | Vitis vinifera |
transcript | Vv00s0566g00010.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACTATACTCTGGAAGGCACCCCAGACGATAAAAGTGGCGTCTTGCAACAG GGAGGGATGTTTGTTTTCAAAGGGAAGCAGTTGTTGTATGCATGGAAAGACEST: gi|110425102|gb|EC991479.1|EC991479
genomic: ACTATACTCTGGAAGGCACCCCAGATGATAAAAGTGGCGTCTTGCAACAGgtttgattta ... tttttatcagGGAGGGATGTTTGTTTTCAAAGGGAAGCAGTTGTTGTATGCATGGAAAGAC
EST: ACTATACTCTGGAAGGCACCCCAGATGATAAAAGTGGCGTCTTGCAACAG GGAGGGATGTTTGTTTTCAAAGGGAAGCAGTTGTTGTATGCATGGAAAGACEST: gi|28966816|gb|CB345849.1|CB345849
genomic: ACTATACTCTGGAAGGCACCCCAGATGATAAAAGTGGCGTCTTGCAACAGgtttgattta ... tttttatcagGGAGGGATGTTTGTTTTCAAAGGGAAGCAGTTGTTGTATGCATGGAAAGAC
EST: ACTATACTCTGGAAGGCACCCCAGACGATAAAAGTGGCGTCTTGCACCAG GGAGGGATGTTTGTTTTCAAAGGGAAGCAGTTGTTGTATGCATGGAAAGACEST: gi|110718544|gb|EE095497.1|EE095497
genomic: ACTATACTCTGGAAGGCACCCCAGATGATAAAAGTGGCGTCTTGCAACAGgtttgattta ... tttttatcagGGAGGGATGTTTGTTTTCAAAGGGAAGCAGTTGTTGTATGCATGGAAAGAC
EST: ACTATACTCTGGAAGGCACCCCAGAAAATAAAAGTGGCGTCTTGCAACAG GGAAGGGAAGTTTTGTTTTCAAAGGGAAEST: gi|30135769|gb|CB921107.1|CB921107
genomic: ACTATACTCTGGAAGGCACCCCAGATGATAAAAGTGGCGTCTTGCAACAGgtttgattta ... tttttatcagGGA-GGGATGTTT-GTTTTCAAAGGGAA
EST: GGCGTCTTGCAACAG GGAGGGATGTTTGTTTTCAAAGGGAAGCAGTTGTTGTATGCATGGAAAGACEST: gi|29784715|gb|CB345795.2|CB345795
genomic: GGCGTCTTGCAACAGgtttgattta ... tttttatcagGGAGGGATGTTTGTTTTCAAAGGGAAGCAGTTGTTGTATGCATGGAAAGAC
EST: ACTATACTCTGGAAGGCACCCCAGACGATAAAAGTGGCGTCTTGCAACAG GGAGGGATGTTTGTTTTCAAAGGGAAGCAGTTGTTGTATGCATGGAAAGACEST: gi|110377599|gb|EC942676.1|EC942676
genomic: ACTATACTCTGGAAGGCACCCCAGATGATAAAAGTGGCGTCTTGCAACAGgtttgattta ... tttttatcagGGAGGGATGTTTGTTTTCAAAGGGAAGCAGTTGTTGTATGCATGGAAAGAC
EST: ACTATACTCTGGAAGGCACCCCAGACGATAAAAGTGGCGTCTTGCAACAG GGAGGGATGTTTGTTTTCAAAGGGAAGCAGTTGTTGTATGCATGGAAAGACEST: gi|110417869|gb|EC983965.1|EC983965
genomic: ACTATACTCTGGAAGGCACCCCAGATGATAAAAGTGGCGTCTTGCAACAGgtttgattta ... tttttatcagGGAGGGATGTTTGTTTTCAAAGGGAAGCAGTTGTTGTATGCATGGAAAGAC
EST: ACTATACTCTGGAAGGCACCCCAGATGATAAAAGTGGCGTCTTGCAACAG GGAGGGATGTTTGTTTTCAAAGGGAAGCAGTTGTTGTATGCATGGAAAGAC
genomic: ACTATACTCTGGAAGGCACCCCAGATGATAAAAGTGGCGTCTTGCAACAGgtttgattta ... tttttatcagGGAGGGATGTTTGTTTTCAAAGGGAAGCAGTTGTTGTATGCATGGAAAGAC
tccttgaatttgttacacagtccttatgtatgtagttttgatttgtttttatcagGGAGGGATGTTTGTTTTCAAAGGGAAGCAGTTGTTGTATGCATGGAAAGACGAAGGAACAGGTGATCATGCCCCTTTAGATGATATCTTTGATGCCTGTT
ttttgat putative branch site (score: 4)
tttgttttt CT-rich tract
ttttgatttgttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgatttagcagtggagtcctcaaaagaatttatctgaactcatacttggatccttgaatttgttacacagtccttatgtatgtagttttgatttgtttttatcagGGAGGGATGTTTGTTTTCAAAGGGAAGCAGTTGTTGTATGCATGGAAAGACGAAGGAACAGGTGATCATGCCCCTTTAGATGATATCTTTGATGCCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA