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...gaaacctaaacaacataatcatgttgtcttttaaaattcatttttaagatcttctcttattatttatatgctaattatggggtttctaaatttttatcagGTATATTCCATCATTGGCAGCAACTTTCACCTTTCCCCAGAGCCTTGGCATCTTGGGCGGGAAACCTGGTGCTTCCACTTACATTGTTGGTGTGCAAGAT
species | Vitis vinifera |
transcript | Vv00s0215g00030.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATTCTTCTATTGGTTCCCTTGGTTCTTGGATTGGAAAAGGTCAATCCCAG GTATATTCCATCATTGGCAGCAACTTTCACCTTTCCCCAGAGCCTTGGCATEST: gi|110387776|gb|EC952472.1|EC952472
genomic: ATTCTTCTATTGGTTCCCTTGGTTCTTGGATTGGAAAAGGTCAATCCCAGgtttgtattc ... tttttatcagGTATATTCCATCATTGGCAGCAACTTTCACCTTTCCCCAGAGCCTTGGCAT
EST: ATTCTTCTATTGGTTCCCTTGGTTCTTGGATTGGAAAAGGTCAATCCCAG GTATATTCCATCATTGGCAGCAACTTTCACCTTTCCCCAGAGCCTTGGCATEST: gi|30251919|gb|CB969652.1|CB969652
genomic: ATTCTTCTATTGGTTCCCTTGGTTCTTGGATTGGAAAAGGTCAATCCCAGgtttgtattc ... tttttatcagGTATATTCCATCATTGGCAGCAACTTTCACCTTTCCCCAGAGCCTTGGCAT
EST: ATTCTTCTATTGGTTCCCTTGGTTCTTGGATTGGAAAAGGTCAATCCCAG GTATATTCCATCATTGGCAGCAACTTTCACCTTTCCCCAGAGCCTTGGCATEST: gi|30251996|gb|CB968635.1|CB968635
genomic: ATTCTTCTATTGGTTCCCTTGGTTCTTGGATTGGAAAAGGTCAATCCCAGgtttgtattc ... tttttatcagGTATATTCCATCATTGGCAGCAACTTTCACCTTTCCCCAGAGCCTTGGCAT
EST: GATTGGAAAAGGTCAATCCCAG GTATATTCCATCATTGGCAGCAACTTTCACCTTTCCCCAGAGCCTTGGCATEST: gi|33401751|gb|CF207378.1|CF207378
genomic: GATTGGAAAAGGTCAATCCCAGgtttgtattc ... tttttatcagGTATATTCCATCATTGGCAGCAACTTTCACCTTTCCCCAGAGCCTTGGCAT
EST: ATTCTTCTATTGGTTCCCTTGGTTCTTGGATTGGAAAAGGTCAATCCCAG GTATATTCCATCATTGGCAGCAACTTTCACCTTTCCCCAGAGCCTTGGCAT
genomic: ATTCTTCTATTGGTTCCCTTGGTTCTTGGATTGGAAAAGGTCAATCCCAGgtttgtattc ... tttttatcagGTATATTCCATCATTGGCAGCAACTTTCACCTTTCCCCAGAGCCTTGGCAT
aagatcttctcttattatttatatgctaattatggggtttctaaatttttatcagGTATATTCCATCATTGGCAGCAACTTTCACCTTTCCCCAGAGCCTTGGCATCTTGGGCGGGAAACCTGGTGCTTCCACTTACATTGTTGGTGTGCAAGAT
ttctaaa putative branch site (score: 2)
tttttatc CT-rich tract
ttctcttattatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaacctaaacaacataatcatgttgtcttttaaaattcatttttaagatcttctcttattatttatatgctaattatggggtttctaaatttttatcagGTATATTCCATCATTGGCAGCAACTTTCACCTTTCCCCAGAGCCTTGGCATCTTGGGCGGGAAACCTGGTGCTTCCACTTACATTGTTGGTGTGCAAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
-aaaccta
- - - - - -aacataa
- - - - - - - - - tcatgtt
- - - - - - - - - - - - - - - - aaaattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggttt