Sequence
atgc intronic sequence ATGC exonic sequence...gatttgaatttgaattccttctcccaagaaaccatgttctgatagaaaagtgtgactctttatatgtattggcttgtaaaattggttttcttgaatgtagAGTGACGTTTTTCTGATTTGCACCAATGCAATGCAATACAATGCCCCAGATACCATATACCATAAACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0090g00610.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA13G05000.1 (Glycine max), 3'ss of exon 6
----gatttgaatttgaattccttctcccaagaaaccatgttctgatagaaaagtgtgactct-ttata--tgtattggcttgtaaaattggttttcttgaatgtagAGTGACGTTTTTCTGATTTGCACCAATGCAATGCAATACAATGCCCCAGATACCATATACCATAAACAG
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taacactttgactgtccattaatttgtcttcttaattgagtaaaaattggaagacaagattttgctataattatactgactggtgaa-------ttgttgaatgcagATTGATGTCTTTTTAATTTGCTCAAATGCAATGCAATACAATGCACCAGAGACTATATACCACAAACAG
upper sequence: Vv19s0090g00610.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G43050.1 (Glycine max), 3'ss of exon 5
---------gatttgaatttgaattccttctcccaagaaaccatgttctgatagaaaagtgtgactctttatatgtattggcttgtaaaattggttttcttgaatgtagAGTGACGTTTTTCTGATTTGCACCAATGCAATGCAATACAATGCCCCAGATACCATATACCATAAACAG
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attttgtctgtgctgtgcattaattgtct-tcctaattgactaaaaattggaagacaag-attttactataattatactgacttgtgaa-------ttgttaaatgcagACTGATGTCTTTTTAATTTGCTCAAATGCAATGCAATACAATGCACCAGAGACTATATACCACAAACAG
upper sequence: Vv19s0090g00610.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA14G02590.1 (Glycine max), 3'ss of exon 5
-gatttgaatttgaattccttctcccaagaaaccatgttctgatagaaaagtgtgactctttatatgtattggcttgtaaaattggttttcttgaatgtagAGTGACGTTTTTCTGATTTGCACCAATGCAATGCAATACAATGCCCCAGATACCATATACCATAAACAG
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ttattatcatttgaaccatttttaaaacgtacatattgtcttcctgattta-gtgattttgaaaggcaaatagatgatttgaatgcaactgttgaatgcagAGTGATGTATTTTTGATTTCCTCAAATGCAATGCAATTCAATGCGGCGGAGACCATATACCACAAACAG
upper sequence: Vv19s0090g00610.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA18G10850.1 (Glycine max), 3'ss of exon 5
gatttgaatttgaattccttctcccaagaaaccatgttctgatagaaa---agtgtgactctttatatgtattggcttgtaaaattggttttcttgaatgtagAGTGACGTTTTTCTGATTTGCACCAATGCAATGCAATACAATGCCCCAGATACCATATACCATAAACAG
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-tctatcatcttaactgcacattaattgttttcctacttgagtaaaaattggaagacaatatttacaatcactgacttgtaaa--tgaaattgttgaatgcagAGTGATGTATTTTTAATTTGCTCAAATGCAATGCAGTACAATGCACCGGAGACTATATACCACAAACAG
upper sequence: Vv19s0090g00610.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA18G10890.1 (Glycine max), 3'ss of exon 4
gatttgaatttgaattccttctcccaagaaaccatgttctgatagaaa----agtgtgactctttatatgtattggcttgtaaaattggttttcttgaatgtagAGTGACGTTTTTCTGATTTGCACCAATGCAATGCAATACAATGCCCCAGATACCATATACCATAAACAG
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--ctatcatcttaactgcacattaattgttttcctacttgagtaaaaattggaagacaatatttacaaaacactgacttgtgaa--tgaaattgttgaatgcagAGTGATGTATTTTTAATTTGCTCAAATGCAATGCAGTACAATGCACCGGAGACTATATACCACAAACA- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaaagtgtgactctttatatgtattggcttgtaaaattggttttcttgaatgtagAGTGACGTTTTTCTGATTTGCACCAATGCAATGCAATACAATGCCCCAGATACCATATACCATAAACAG
ttttctt CT-rich tract
tctttatatgtatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gatttgaatttgaattccttctcccaagaaaccatgttctgatagaaaagtgtgactctttatatgtattggcttgtaaaattggttttcttgaatgtagAGTGACGTTTTTCTGATTTGCACCAATGCAATGCAATACAATGCCCCAGATACCATATACCATAAACAG
- - - - - - - - ccttctc
- - - - - - - - - - - - - - aaaccat
- - - - - - - - - - - - - - - - - - - - - tagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaattg