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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgatttcattttctttggctttttttttttttttttttttttttgtctataaaatttcattaccaaattaccatttacttggtttttattgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG

Basic information

species Vitis vinifera
transcript Vv18s0122g00190.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30329651|gb|CD012913.1|CD012913
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|26262702|gb|CA813765.1|CA813765
EST:     GATGACATGCCAGCACACATCAAATCTTCAAAGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|110387568|gb|EC952248.1|EC952248
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|110398891|gb|EC965370.1|EC965370
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|351014365|gb|FQ437367.1|FQ437367
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|110425437|gb|EC991822.1|EC991822
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|110386869|gb|EC951501.1|EC951501
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|71857030|gb|DT006085.1|DT006085
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAGG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAGG
EST: gi|110732164|gb|EE107221.1|EE107221
EST:     GATGACATGCCANCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|26257553|gb|CA808616.1|CA808616
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|28959343|gb|CB339672.1|CB339672
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGCCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|26258319|gb|CA809382.1|CA809382
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|254916144|gb|GR904002.1|GR904002
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|28959153|gb|CB339578.1|CB339578
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGCCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|30301103|gb|CB977897.1|CB977897
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|26257283|gb|CA808346.1|CA808346
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|71856841|gb|DT005896.1|DT005896
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAAACATGGGAACTTGGCAGG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAA-CATGGGAACTTGGCAGG
EST: gi|110426779|gb|EC993200.1|EC993200
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|110711159|gb|EE087374.1|EE087374
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGTTAAACATGGGAACTTGGCAA
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|110425239|gb|EC991621.1|EC991621
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|110379372|gb|EC944560.1|EC944560
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|30301035|gb|CB977829.1|CB977829
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|28960863|gb|CB340439.1|CB340439
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|28959155|gb|CB339579.1|CB339579
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGT-GCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|30137614|gb|CB922952.1|CB922952
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|28959315|gb|CB339658.1|CB339658
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGT-GCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctataaaatttcattaccaaattaccatttacttggtttttattgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
                                      tttttatt  CT-rich tract
     taaaatttcattacca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaatgatttcattttctttggctttttttttttttttttttttttttgtctataaaatttcattaccaaattaccatttacttggtttttattgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA