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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaaaatctctcctatttctataagcattatttgacattggtattcatattatttttatgcttttcagGTACCTGATTTTGCATATTCTCCAAATCCACACA

Basic information

species Vitis vinifera
transcript Vv18s0072g00460.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34548933|gb|CF517165.1|CF517165
EST:     ACTCTCCTCCACAGAACCACCTGAAAAGCACCTCCAATGTTCATCACCAG                         GTACCTGATTTTGCATATTCTCCAAATCCACACA
genomic: ACTCTCCTCAACAGAACCACCTGAAAAGCACCTCCAATGTTCATCACCAGgtaagaaaaa ... tgcttttcagGTACCTGATTTTGCATATTCTCCAAATCCACACA
EST: gi|33407190|gb|CF212817.1|CF212817
EST:     ACTCTCCTCCACAGAACCACCTGAAAAGCACCTCCAATGTTCATCACCAG                         GTACCTGATTTTGCATATTCTCCAAATCCACACA
genomic: ACTCTCCTCAACAGAACCACCTGAAAAGCACCTCCAATGTTCATCACCAGgtaagaaaaa ... tgcttttcagGTACCTGATTTTGCATATTCTCCAAATCCACACA
EST: gi|110425162|gb|EC991541.1|EC991541
EST:     ACTCTCCTCAACAGAACCACCTGAAAAGCACCTCCAATGTTCATCACCAG                         GTACCTGATTTTGCATATTCTCCAAATCCACACA
genomic: ACTCTCCTCAACAGAACCACCTGAAAAGCACCTCCAATGTTCATCACCAGgtaagaaaaa ... tgcttttcagGTACCTGATTTTGCATATTCTCCAAATCCACACA
EST: gi|110415787|gb|EC981720.1|EC981720
EST:     AACAGAACCACCTGAAAAGCACCTCCAATGTTCATCACCAG                         GTACCTGATTTTGCATATTCTCCAAATCCACACA
genomic: AACAGAACCACCTGAAAAGCACCTCCAATGTTCATCACCAGgtaagaaaaa ... tgcttttcagGTACCTGATTTTGCATATTCTCCAAATCCACACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttctataagcattatttgacattggtattcatattatttttatgcttttcagGTACCTGATTTTGCATATTCTCCAAATCCACACA
                atttgac  putative branch site (score: 4)
                                       tttttatgcttttc  putative PPT
                            tattcatattattttt  TA-rich tract