Sequence
atgc intronic sequence ATGC exonic sequencegttggtatttcataagtttaatcagaataacaaaacttcatctcacctggttgtttataagcatctgtttttcagATTATTCATGTTAATCTCACTCAAGACAGTCCTAAACCATTGGAAGAAGGGAAAGCCTTGGACATGACATATTCTGTTCAATGGATTCCAACAGATGTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0041g00680.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os02g34690.1 (Oryza sativa), 3'ss of exon 5
gttggtatttcataagtttaatcagaata----acaaaacttcatctcacctggttgtttataagcatctgttttt-cagATTATTCATGTTAATCTCACTCAAGACAGTCCTAAACCATTGGAAGAAGGGAAAGCCTTGGACATGACATATTCTGTTCAATGGATTCCAACAGATGTTG
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gtttgggtttcatgaacttgcatttattccttcgcaggaccttcaagaaactgagtattactactgttacattcctgtagATTATTCATGTTAATCTTACTCAAGAAAGTCCAAAGCTTATTGATGCGGGTAAGGCATTGGATATGACATATTCTGTCAAGTGGGAACCAACCAATGTAA
upper sequence: Vv18s0041g00680.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA05G30210.1 (Glycine max), 3'ss of exon 5
----gttggtatttcataagtttaatcagaataacaaaacttcatctcacct----ggttgtttataagcatctgttt---ttcagATTATTCATGTTAATCTCACTCAAGACAGTCCTAAACCATTGGAAGAAGGGAAAGCCTTGGACATGACATATTCTGTTCAATGGATTCCAACAGATGTTG
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gttagaagttatttaaatatcttatgctatcttatgacaggttatggaatccttgaagtttcatattaaggtctgtttccttgcagATTATTCATGTTAATCTCACTCAGGATATCCCAAAGCCTTTGGAAGTAGGAAAACATTTGGACATGACATATTCTGTCAAATGGGATTCTACCAATGTCA
upper sequence: Vv18s0041g00680.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G13370.1 (Glycine max), 3'ss of exon 5
----gttggtatttcataagtttaatcagaataacaaaacttcat---ctcacctggttgtttataagcatctgttt---ttcagATTATTCATGTTAATCTCACTCAAGACAGTCCTAAACCATTGGAAGAAGGGAAAGCCTTGGACATGACATATTCTGTTCAATGGATTCCAACAGATGTTG
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gttagaagttatttaaatatcttatgctatcttaagacaggttatggatccttcaagtttcatattaaggtttgtttccttgcagATTATTCATGTTAATCTCACTCAGGATATCCCAAAGCCTTTGGAAGTGGGAAAACATTTGGACATGACATATTCTATCAAATGGGATTCTACCAATGTCA
upper sequence: Vv18s0041g00680.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT1G10950.1 (Arabidopsis thaliana), 3'ss of exon 5
----gttggtatttcataagtttaatcagaataacaaaacttcatc--tcacctggttgtttataagcatctgttttt-cagATTATTCATGTTAATCTCACTCAAGACAGTCCTAAACCATTGGAAGAAGGGAAAGCCTTGGACATGACATATTCTGTTCAATGGATTCCAACAGATGTTG
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gtcggttgttaccacgcca-ttaagcaatagtatggatatcatgtgaactacatctgtgatcttatgtatctattttaatagATCATTCATGTTAATCTCACTCAAGACAACCCAAGGCCATTGGAAGCAGGGAAAAAAATGGACCTGACGTATTCTGTGCAATGGATTCCAACAAATGTCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atcagaataacaaaacttcatctcacctggttgtttataagcatctgtttttcagATTATTCATGTTAATCTCACTCAAGACAGTCCTAAACCATTGGAAGAAGGGAAAGCCTTGGACATGACATATTCTGTTCAATGGATTCCAACAGATGTTG
tctgtttttc CT-rich tract
aataacaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttggtatttcataagtttaatcagaataacaaaacttcatctcacctggttgtttataagcatctgtttttcagATTATTCATGTTAATCTCACTCAAGACAGTCCTAAACCATTGGAAGAAGGGAAAGCCTTGGACATGACATATTCTGTTCAATGGATTCCAACAGATGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG